Sequence
atgc intronic sequence ATGC exonic sequenceAAGCAAATTCATTCCATCATGAATATAGTTCTATGGCCTGCGCAATTGAGTTTGTTGATGATGTACAGTCAGCGATTGACCATATACATTGTTATGGAAGgtacttagagtctcccccccctctccctcattattgaaaatctagtaaaccagacattcactgctgttcttttatttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G061777_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g38150.2 (Oryza sativa), 5'ss of exon 15
AAGCAAATTCATTCCATCATGAATATAGTTCTATGGCCTGCGCAATTGAGTTTGTTGATGATGTACAGTCAGCGATTGACCATATACATTGTTATGGAAGgtactta--------gagtc---tcccccccctctccctcattattgaaaatctagtaaacca------gacattcactgctg------ttcttttatttcag---------
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AAGCTGTTTCATTTCATCATGAGTATAGTTCTATGGCCTGCACTGTTGAGTTTGTTGATGATGTTCAATCAGCAATTGACCATATTCATCGTTATGGAAGgtacctaatagttgtgactcctgtctcccccttatcccatagtactagttgttttcttaaacaaaaaatgagattcaatgtaacccaaatttccatattctatctgtttcag
upper sequence: GRMZM2G061777_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv08s0007g01060.t01 (Vitis vinifera), 5'ss of exon 16
AAGCAAATTCATTCCATCATGAATATAGTTCTATGGCCTGCGCAATTGAGTTTGTTGATGATGTACAGTCAGCGATTGACCATATACATTGTTATGGAAGgtacttagagtctcccccccctctccctcattattgaaaatctagtaaacca-gacattcactgctgttcttttatttcag---------------
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AGGTTAACTCATTCCATCATGAGTACAATTCCATGGCTTGCACAGTTGAAATTGTAGATGATGTGCATTCTGCCATTGACCATATACATCGACATGGAAGgcatgttgaatactcccatttttcttcttttgtttagcatataaatattttatggccgtttgtgatattctggtttctctttaacttttctttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|166516789|gb|EG290144.1|EG290144EST: CGATTGACCATATACATTGTTATGGAAG TGCACATACAGATTGCATTGTCACTACAGATGATAAAGTAGCAGAAACTTT
genomic: CGATTGACCATATACATTGTTATGGAAGgtacttagag ... tttatttcagTGCACATACAGATTGCATTGTCACTACAGATGATAAAGTAGCAGAAACTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGCAAATTCATTCCATCATGAATATAGTTCTATGGCCTGCGCAATTGAGTTTGTTGATGATGTACAGTCAGCGATTGACCATATACATTGTTATGGAAGgtacttagagtctcccccccctctccctcattattgaaaatctagtaaaccagacattcactgctgttcttttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG