Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGCGCTCGTGCGTCAGGTCGTCACGGCTGCTTTCGCCAACAACTCCGGCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaatagatatattgacagtaaacatgcttgtcggcagatcactacacatgtacagtgtgcatgtattatagtctctgcttgatttatttgtcac...

Basic information

species Zea mays
transcript GRMZM2G061088_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061088_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g22352.1 (Oryza sativa), 5'ss of exon 1
CGAGGCGCTCGTGCGTCAGGTCGTCACGGCTGCTTTCGCCAACAACTCCGGCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaatagatatattg-acagtaaacatgcttgtcggcagatcactacacatgtacagtgtgcatgtattatagtctctgcttgatttatttgtcac--
||||||||| || || |||| ||||  ||| ||  ||||||||||||||||| ||||  |||| |||||||||||||||||||| ||||||||||||||||| |||   |    |  | | |||   || ||      | |||| |  ||       |  |  |    |  |   || | |    ||||  |  |  | |   
CGAGGCGCTGGTCCGGCAGGCCGTCGTGGCCGCCGTCGCCAACAACTCCGGCCTCGCCGCCGGCCTCATCCGCCTCCATTTCCACGACTGCTTCGTCAGGgttcgtctctctccaactcgtacatgtaaaataa--agctgcagcttgcttagttaattaacagcaactaaaccttaatttgc-tttgaactgataattagga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101393306|gb|EB818584.1|EB818584
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|71769389|gb|DR967326.1|DR967326
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|91873609|gb|EB403566.1|EB403566
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|74234955|gb|DT642869.1|DT642869
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|101394135|gb|EB819002.1|EB819002
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|76013126|gb|DT940296.1|DT940296
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|76917882|gb|DV167055.1|DV167055
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|71757508|gb|DR955445.1|DR955445
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|89247619|gb|DY619405.1|DY619405
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|71449218|gb|DR830268.1|DR830268
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|211044472|gb|FL249663.1|FL249663
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGCTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|76017820|gb|DT944990.1|DT944990
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|88757892|gb|DY542033.1|DY542033
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|78091733|gb|DV520107.1|DV520107
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAAGG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|71434227|gb|DR815277.1|DR815277
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|71313660|gb|DR793408.1|DR793408
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|78115746|gb|DV534134.1|DV534134
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|78118771|gb|DV537155.1|DV537155
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|89253102|gb|DY624888.1|DY624888
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|78110465|gb|DV528875.1|DV528875
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|78112163|gb|DV530559.1|DV530559
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|71307258|gb|DR789795.1|DR789795
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|89251837|gb|DY623623.1|DY623623
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|93016035|gb|EB641555.1|EB641555
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|89763904|gb|DY690903.1|DY690903
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|91051965|gb|EB162383.1|EB162383
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|94477939|gb|EB706897.1|EB706897
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|74245498|gb|DT653412.1|DT653412
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|91875594|gb|EB405551.1|EB405551
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|78105211|gb|DV523629.1|DV523629
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCT
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCT
EST: gi|50331725|gb|CO526851.1|CO526851
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|37422197|gb|CF648804.1|CF648804
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|91868857|gb|EB400184.1|EB400184
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|76934123|gb|DV173746.1|DV173746
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|71434925|gb|DR815975.1|DR815975
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|101386073|gb|EB815080.1|EB815080
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|78089862|gb|DV518236.1|DV518236
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|71429955|gb|DR811005.1|DR811005
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|71448189|gb|DR829239.1|DR829239
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|78111737|gb|DV530134.1|DV530134
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
EST: gi|78088655|gb|DV517048.1|DV517048
EST:     GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGG                         GGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG
genomic: GCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 38 (upstream exon), 40 (downstream exon)
Score: 3

CGAGGCGCTCGTGCGTCAGGTCGTCACGGCTGCTTTCGCCAACAACTCCGGCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACGGAGCGTGAGTCCCCGGCCAACGACCCGAGCCTGCGCGGCTTCGACGTGA


Block sizes: 44 (upstream exon), 43 (downstream exon)
Score: 32

CGAGGCGCTCGTGCGTCAGGTCGTCACGGCTGCTTTCGCCAACAACTCCGGCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACGGAGCGTGAGTCCCCGGCCAACGACCCGAGCCTGCGCGGCTTCGACGTGA


Block sizes: 13 (upstream exon), 37 (downstream exon)
Score: 1

CGAGGCGCTCGTGCGTCAGGTCGTCACGGCTGCTTTCGCCAACAACTCCGGCGTCGCACCCGGGCTCATCCGCCTCCATTTCCATGACTGCTTCGTCAGGgtacgtaaat ... tcacacgcagGGTTGCGATGCCTCCGTGCTCCTGTCCGTGAACCCCGCCGGCGGCAAAACGGAGCGTGAGTCCCCGGCCAACGACCCGAGCCTGCGCGGCTTCGACGTGA