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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTATTTCTCCAGCCCCCGCTCCGCCGCCGCCGCTCTCCTCCTCCGCACCCCCGCCCTGTTTCGCCATCGGCCCATCGCGCACCTGCCTGTGCCACCTGgtaaggagcaccgcatgcgccctattccacacgccacagtattttctagaagtttctggaggccatccgcagagtcgcgtatgaattatttctaattagc...

Basic information

species Zea mays
transcript GRMZM2G060896_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211200016|gb|FL079806.1|FL079806
EST:     CCCCGCCCTGTTTCGCCATCGGCCCATCGCGCACCTGCCCGTGCCACCTG                         AGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGG
genomic: CCCCGCCCTGTTTCGCCATCGGCCCATCGCGCACCTGCCTGTGCCACCTGgtaaggagca ... tttgatccagAGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGG
EST: gi|71305271|gb|DR788769.1|DR788769
EST:     GTTTCGCCATCGGCCCATCGCGCACCTGCCTGTGCCACCTG                         AGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGG
genomic: GTTTCGCCATCGGCCCATCGCGCACCTGCCTGTGCCACCTGgtaaggagca ... tttgatccagAGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGG
EST: gi|23199597|gb|BU582162.1|BU582162
EST:     CCCCGCCCTGTTTCGCCATCGGCCCATCGCGCACCTGCCCGTGCCACCTG                         AGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGG
genomic: CCCCGCCCTGTTTCGCCATCGGCCCATCGCGCACCTGCCTGTGCCACCTGgtaaggagca ... tttgatccagAGGCTGGGAACTCCAAAGAGGAACAGCGTCCATGGAGGCTGGAGGCGCAGG