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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGAGCTACTAGGTGACCGTCGCGGCCGCCCTACGCCACGTGCTCGATCCAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAGgtattcgcactccttctcttgcctttcttctgtccgaaactgagcagccgaaccctattcagatctgatgtaattacacgtttatatacgtatttgccta...

Basic information

species Zea mays
transcript GRMZM2G060870_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211301820|gb|FK983372.1|FK983372
EST:     CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAG                         GTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
genomic: CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAGgtattcgcac ... attctttcagGTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
EST: gi|211377987|gb|FK983378.1|FK983378
EST:     CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAG                         GTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
genomic: CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAGgtattcgcac ... attctttcagGTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
EST: gi|211301817|gb|FK983369.1|FK983369
EST:     CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAG                         GTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
genomic: CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAGgtattcgcac ... attctttcagGTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
EST: gi|211301814|gb|FK983366.1|FK983366
EST:     CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAG                         GTTCATAAATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGTATGAAGC
genomic: CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAGgtattcgcac ... attctttcagGTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
EST: gi|211301815|gb|FK983367.1|FK983367
EST:     CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACMAG                         GTTCATAGATGGCAGAGACGGTGTTCACCTSKCCTCTTTGGAAGGGATGAA
genomic: CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAGgtattcgcac ... attctttcagGTTCATAGATGGCAGAGACGGTGTTCACC--CCCTCTTTGGAAGGGATGAA
EST: gi|211301822|gb|FK983374.1|FK983374
EST:     CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAG                         GTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
genomic: CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAGgtattcgcac ... attctttcagGTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
EST: gi|211377989|gb|FK983380.1|FK983380
EST:     CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAG                         GTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
genomic: CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAGgtattcgcac ... attctttcagGTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
EST: gi|211301812|gb|FK983364.1|FK983364
EST:     CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAG                         GTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
genomic: CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAGgtattcgcac ... attctttcagGTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
EST: gi|211301818|gb|FK983370.1|FK983370
EST:     CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAG                         GTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
genomic: CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAGgtattcgcac ... attctttcagGTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
EST: gi|211377986|gb|FK983377.1|FK983377
EST:     CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAG                         GTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
genomic: CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAGgtattcgcac ... attctttcagGTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
EST: gi|211453296|gb|FL230458.1|FL230458
EST:     CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAG                         GTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC
genomic: CAGCCTCGTCGGCTTCTTCGCACCCGTCACCGGCGGTCAGCACCCACCAGgtattcgcac ... attctttcagGTTCATAGATGGCAGAGACGGTGTTCACCCCCTCTTTGGAAGGGATGAAGC