Sequence
atgc intronic sequence ATGC exonic sequenceGCAGTGATCCGTGCTATATCGAAGCATATCATTTGGCAGATCCAACTGATGGCAGAATCACCCTACATCTGAAGgtatggcctgattgatgcatctttctctatactattaacttgaaatatacctttgagccacgattactgctaatgcatcggatatagtattaaccgattg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G060727_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g55010.1 (Oryza sativa), 5'ss of exon 4
--------------------------GCAGTGATCCGTGCTATATCGAAGCATATCATTTGGCAGATCCAACTGATGGCAGAATCACCCTACATCTGAAGgtatggcctgattgatgcatctttctctatactattaacttgaaatatacctttgagccacgattactgctaatgcatcggat--atagtattaaccgattg
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TCCAAAAACACTTTCTTTGACTGGCAGCAGTGATCCATGCTATATTGAGGCATATCATCTGGCAGATCCAACTGATGGGAGAATCACCTTACATCTAAAGgtatggcctgatcgatgcatctttcccttgtttgcttaacagta-tattcattttattgtacttttctgttttggtctctgttaaatgctgtttagggaca-
upper sequence: GRMZM2G060727_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g07470.1 (Oryza sativa), 5'ss of exon 4
--------------------------GCAGTGATCCGTGCTATATCGAAGCATATCATTTGGCAGATCCAACTGATGGCAGAATCACCCTACATCTGAAGgtatggcctgattgatgcatctttctctatactattaacttgaaatatacctttgagccacgattactgctaatgcatcggatatagtattaaccgattg-----
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CCCAAAAGCGTATACTTTGACCGGCAGCAGTGATCCATGCTATATTGAAGCGTATCATTTGGCAGATCCAACTGATGGCAGAATCACACTGCATCTAAAGgtaaggcctgatggacttct-tttctctat----ttgatttcatactttttattgaattaatgtttctgtcatggtcactgttaaatgctggttctgtcatgata
upper sequence: GRMZM2G060727_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv14s0171g00280.t01 (Vitis vinifera), 5'ss of exon 4
--------------------------GCAGTGATCCGTGCTATATCGAAGCATATCATTTGGCAGATCCAACTGATGGCAGAATCACCCTACATCTGAAGgtatggcctgattgatgcatctttctctatactattaacttgaaatatacctttgagccacgattactgctaatgca---tcggatatagtattaaccgattg-----
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TCCAAGTGCAATTACTTTGACCGGTAGTAGTGACCCTTGCTATGTGGAAGCATATCATTTGACAGACGCAAGTGATGGAAGAATCACACTGCATTTGAAGgttaaat---atttcttcccttgcttctaaact-----ttttaaatgctcttgtgagtcctcccttttgtggttgtggttttatatgctataatgacgaagtgatggaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76912182|gb|DV164603.1|DV164603EST: CATATCATTTGGCAGATCCAACTGATGGCAGAATCACCCTACATCTGAAG GGTGGACATTCGTGTTGGCCTCTCTGGAGCACTGTATTATATGGATGGTTT
genomic: CATATCATTTGGCAGATCCAACTGATGGCAGAATCACCCTACATCTGAAGgtatggcctg ... aactcaacagGGTGGACATTCGTGTTGGCCTCTCTGGAGCACTGTATTATATGGATGGTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAGTGATCCGTGCTATATCGAAGCATATCATTTGGCAGATCCAACTGATGGCAGAATCACCCTACATCTGAAGgtatggcctgattgatgcatctttctctatactattaacttgaaatatacctttgagccacgattactgctaatgcatcggatatagtattaaccgattg
- - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG