1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTGCCCTCCCCACGTCCACCTCTCTCCGCCGAAGAATCGGCGGCGGCGGCGGCGGCGGCGAGCGCCTTCCCTTGTCAAAATCCACCCGGCGGCAGAGCAGgtcaactcgattcctcgttttcaactggtcgatttggcaaaacgtttgtctacttgcaaccaataggttggttgatgcgtgtgcttctgttcaaactcgcag
species | Zea mays |
transcript | GRMZM2G060669_T04 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCGCCTTCCCTTGTCAAAATCCACCCGGCGGCAGAGCAG AGCCTCGTTGCTGAGGAGGGGAGATGGCAGGCATGACCGATATGCCGATGAEST: gi|20802865|gb|BQ293915.1|BQ293915
genomic: AGCGCCTTCCCTTGTCAAAATCCACCCGGCGGCAGAGCAGgtcaactcga ... aaactcgcagAGCCTCGTTGCTGAGGAGGGGAGATGGCAGGCATGACCGATATGCCGATGA
EST: CGGCGAGCGCCTTCCC-TGTCAAAATCCACCCGGCGGCAGAGCAG AGCCTCGTTGCTGAGGAGGGGAGATGGCAGGCATGACCGATATGCCGATGAEST: gi|26456474|gb|CA828057.1|CA828057
genomic: CGGCGAGCGCCTTCCCTTGTCAAAATCCACCCGGCGGCAGAGCAGgtcaactcga ... aaactcgcagAGCCTCGTTGCTGAGGAGGGGAGATGGCAGGCATGACCGATATGCCGATGA
EST: AGCGCCTTCCCTTGTCAAAATCCACCCGGCGGCAGAGCAG AGCCTCGTTGCTGAGGAGGGGAGATGGCAGGCATGACCGATATGCCGATGAEST: gi|37395737|gb|CF635151.1|CF635151
genomic: AGCGCCTTCCCTTGTCAAAATCCACCCGGCGGCAGAGCAGgtcaactcga ... aaactcgcagAGCCTCGTTGCTGAGGAGGGGAGATGGCAGGCATGACCGATATGCCGATGA
EST: AGCGCCTTCCCTTGTCAAAATCCACCCGGCGGCAGAGCAG AGCCTCGTTGCTGAGGAGGGGAGATGGCAGGCATGACCGATATGCCGATGA
genomic: AGCGCCTTCCCTTGTCAAAATCCACCCGGCGGCAGAGCAGgtcaactcga ... aaactcgcagAGCCTCGTTGCTGAGGAGGGGAGATGGCAGGCATGACCGATATGCCGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCCCTCCCCACGTCCACCTCTCTCCGCCGAAGAATCGGCGGCGGCGGCGGCGGCGGCGAGCGCCTTCCCTTGTCAAAATCCACCCGGCGGCAGAGCAGgtcaactcgattcctcgttttcaactggtcgatttggcaaaacgtttgtctacttgcaaccaataggttggttgatgcgtgtgcttctgttcaaactcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG