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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTCGTCGCAGGCGAACCTCGACAAGATGCAGCTCCGCCAGAGCTACCGCAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagccgccccccaccctcaaccgaacctctgccgggtcctgatctggtcgttgcccgcgggggagctcgtcttgtgtaccgtcctgacggttttctcttctcgatgtggttgcag

Basic information

species Zea mays
transcript GRMZM2G060564_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060564_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g03180.1 (Oryza sativa), 5'ss of exon 1
GCGTCGTCGCAGGCGAACCTCGACAAGATGCAGCTCCGCCAGAGCTACCGCAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagccgccccccaccctcaaccgaacctctgccgggtcctgatctggtcgttgcccgcgg-gggagctcgtcttg-tgtaccgtcctgacggttttctcttctcgatgtggttgcag
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GCGTCGTCGCAGGCCAACCTCGACAAGATGCAGCTCCGCCAGAGCTACCGCAACCTCTGGCACTCCGATCTCACCAGCACCATCCAGGCCGACTTCCCATgtatgtcaacttttctttttcccccct----ctctgc-gaatgctaatactgcgccttcccatggcgagatttcgttctgatgggttctccctgtcgttgttgctgct----gctgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211520836|gb|FL034043.1|FL034043
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|37416319|gb|CF645810.1|CF645810
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|211520841|gb|FL034048.1|FL034048
EST:     CAACGTCTGGCACACCGACHTGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|211520834|gb|FL034041.1|FL034041
EST:     CAACGTCTGGCACACCGACATGACTAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|211520840|gb|FL034047.1|FL034047
EST:     CAACGTCTGGMACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|211397639|gb|FL034039.1|FL034039
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|211397637|gb|FL034037.1|FL034037
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|148930645|gb|EC872835.2|EC872835
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|211520833|gb|FL034040.1|FL034040
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|211397638|gb|FL034038.1|FL034038
EST:     AACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCAMCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: AACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCC-CCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|211520838|gb|FL034045.1|FL034045
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|211520842|gb|FL034049.1|FL034049
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|78090964|gb|DV519338.1|DV519338
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|211520835|gb|FL034042.1|FL034042
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|101396680|gb|EB820265.1|EB820265
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|211520837|gb|FL034044.1|FL034044
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|76011810|gb|DT938980.1|DT938980
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG
EST: gi|211520839|gb|FL034046.1|FL034046
EST:     CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCT                         ACTGCTGCCTCGCGCTGTGGTG
genomic: CAACGTCTGGCACACCGACATGACGAACGCCATCCAGGCCGACTTCCCCTgtacgtagcc ... gtggttgcagACTGCTGCCTCGCGCTGTGGTG