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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGTTGTCAAGCTCATCAGCGCCGAGGGCTTCGAATTCGTTGTTGACAGGAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtactcttcacctcttccattcccatcagcgcgccgtcctcgcatcacatccatccctctcgtcttccccacag

Basic information

species Zea mays
transcript GRMZM2G059282_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059282_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g48030.1 (Oryza sativa), 5'ss of exon 1
GGCGTTGTCAAGCTCATCAGCGCCGAGGGCTTCGAATTCGTTGTTGACAGGAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtactcttcacctcttccattcccatcagcgcgccgtcctcgcatcacatccatccctctcgtcttccccacag---------------
||| | ||||||||||||||||||||||||||||| ||||| || |||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||  |   |  | | | |||  |  ||| ||  ||    | | |||  | |  |     || |    | | | ||| |                
GGCTTCGTCAAGCTCATCAGCGCCGAGGGCTTCGAGTTCGTCGTCGACAAGAAGGCCGCCATGGTCTCCAACACGCTCCGCAACATGCTCACCTCCCCCGgttcgtctccttccccatctatcgatccgattcgctttgctttctcaaaccctagattgccttgaattatccaccaaatccaaatccaacacag

upper sequence: GRMZM2G059282_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv06s0004g05560.t01 (Vitis vinifera), 5'ss of exon 1
GGCGTTGTCAAGCTCATCAGCGCCGAGGGCTTCGAATTCGTTGTTGACAGGAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtactcttcacctcttc-cattcccatcagcgcgccgt----cctcgcatcacatccatccctctcgtcttccccacag----------------
| |  ||| ||||| |||||||| |||||||||||||||||  | |||| || ||| |||||||| ||  | ||| |||| ||||||||||| || || ||||   | |  ||    | ||| |    | || ||    |       | | | |  |     |    |    |  |     | |                
GACACTGTGAAGCTGATCAGCGCAGAGGGCTTCGAATTCGTGATCGACAAGAGGGCTGCCATGGTTTCTCAGACCATCCGGAACATGCTCACTTCTCCCGgtatatttccgtttttattttctcgagacgattaggctactagaaaacgtaggaaaaaggaaagaaattaaattcttgaatcggaggtttattttattta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211141709|gb|FL287346.1|FL287346
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|13490768|gb|BG517532.1|BG517532
EST:     AAGGCCGCCATGGTCTCCAATATTCTTTCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: AAGGCCGCCATGGTCTCCAACA-CCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|32937826|gb|CF042645.1|CF042645
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|61119394|gb|DN560355.1|DN560355
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GTGGCTTTTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|32938012|gb|CF042831.1|CF042831
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|211111068|gb|FL388616.1|FL388616
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|211214239|gb|FL370034.1|FL370034
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|211163296|gb|FL418729.1|FL418729
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|9461612|gb|BE453818.1|BE453818
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|211140277|gb|FL369583.1|FL369583
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|211491482|gb|FL425975.1|FL425975
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|7958448|gb|AW862750.1|AW862750
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|211431958|gb|FL418483.1|FL418483
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|211104586|gb|FL031932.1|FL031932
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|211468741|gb|FL385438.1|FL385438
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAKGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
EST: gi|45846861|gb|CN070804.1|CN070804
EST:     GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAG                         GCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA
genomic: GAAGGCCGCCATGGTCTCCAACACCCTCCGCAACATGCTCACATCCCCAGgtagggtact ... ttccccacagGCGGCTTCTCTGAGACGCGCCAGGGCGAGGTCCGCTTCCCAGAGATCCCCA