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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATAGGTGGTGGTGGTGGTGGCGGCGGCGGCAGCGGGACTGGCGGAGGCAGCCATGTTTTTCAGCAGGCTCGATGACTCGCCCATGTTCAGGAAGCAGgtgagggggcccagccggatcttggtgcatgctgtctgtgagtgtggatcctggtaccgcttgggaggttgatctcggcctctggggcgggcgggagaga...

Basic information

species Zea mays
transcript GRMZM2G059225_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059225_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 1
---TGAATAGGTGGTGGTGGTGGTGGCGGCGGCGGCAGCGGGACTGGCGGAGGCAGCCATGTTTTTCAGCAGGCTCGATGACTCGCCCATGTTCAGGAAGCAGgtgagggggcccagccggatcttggtgcatg-ctgtctgtgagtgtggatcctggtaccgcttgggaggttgatctcggcctctggggcgggcgggagaga-----
       ||||  |     |  |||  || ||  || ||||  | ||||| ||| |  |||||||||| |||||| |||||||||||||||||||||||||||||||| | |   ||    |||| ||| | || | || || | | |    | |  |    | ||||||||||| | || | |    ||  | |  || ||       
GTGGTGGTAGGGAGGCAAAGCAGTG-TGGTGGTCGCGGCGG--CGGGCGGCGGCGGAGATGTTTTTCACCAGGCTGGATGACTCGCCCATGTTCAGGAAGCAGgtgagtgagtggag----atctcggttcgtggcggtttgggggcgctcgtgc--gccgtggttgggaggttggtgtcaggcgagtggaagcgtaggggaagaagaa