Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGACGAACCGGCTCCTGCACGCCCTTCCCCTCCCCTCCGTCCTCCGCTCCAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgaccgtccaacgttgctgtaacttaggatctcgggtcatgcatgtggtttgttacgtattccatcgagctcatcagattcgtggctggctcgatcgatctctcgcag

Basic information

species Zea mays
transcript GRMZM2G059151_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G059151_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g13810.1 (Oryza sativa), 5'ss of exon 1
CAGACGAACCGGCTCCTGCACGCCCTTCCCCTCCCCTCCGTCCTCCGCTCCAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc-gtccaacgttgctgtaacttaggatctcgggtcatgcatgtggtttgttacgtattccatcgagctcatcagattcg---tggctggctcgatcgatctctcgcag
||||| | ||| |||  |||||| || ||||||||||||||||||||||||  |||| |  ||| || ||||||||||||||||||||| |||||||||||| |||  |  | || ||  | ||||   |   |  |||   || ||| ||     ||||   || |     |||||  | ||||| |   ||| ||    | | | |     ||||
CAGACCAGCCGCCTCAAGCACGCGCTCCCCCTCCCCTCCGTCCTCCGCTCCCCCTTCGCCCTCGCCGACGGCCCCGCCAGCTCCGCCGCCGGCAACCCCGgtcagtcccgagcccgactcttctgtggatctcgccctcc--tcctgcttggttggtgttcgttactggtgtgagct--ttagatttgatctggttgtggtggt-ggtggtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29167975|gb|CB411235.1|CB411235
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211362770|gb|FL362322.1|FL362322
EST:     CAACTTCTCGGTCGTCGACGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGC-AGCCCTCCGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211458486|gb|FL255599.1|FL255599
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|149083748|gb|EE173108.2|EE173108
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211336172|gb|FL255580.1|FL255580
EST:     CAACTTCTCGGTCGTCGACGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211334015|gb|FL255574.1|FL255574
EST:     CAACTTCTCGGTCGTCGACGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|148953762|gb|EC899129.2|EC899129
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211336175|gb|FL255583.1|FL255583
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211336169|gb|FL255577.1|FL255577
EST:     CAACTTCTCGGTCGTCGACGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211458479|gb|FL255592.1|FL255592
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211458477|gb|FL255590.1|FL255590
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211334013|gb|FL255572.1|FL255572
EST:     CAACTTCTCGGTCGTCGACGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211336171|gb|FL255579.1|FL255579
EST:     CAACTTCTCGGTCGTCGACGGCCCCGCCAGCTCCGCCGCGGGCTACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|5268364|gb|AI770328.1|AI770328
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211462254|gb|FL324872.1|FL324872
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211179440|gb|FL364368.1|FL364368
EST:     CAACTTCTCGGTCGTCGACGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211336168|gb|FL255576.1|FL255576
EST:     CAACTTCTCGGTCGTCGACGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|149083929|gb|EE173306.2|EE173306
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211334016|gb|FL255575.1|FL255575
EST:     CAACTTCTCGGTCGTCGACGGCCCCGCCAGCTCCGCCGCGGGCNACCCCG                         ATGAGMTCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211187935|gb|FL314087.1|FL314087
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211336179|gb|FL255587.1|FL255587
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211458484|gb|FL255597.1|FL255597
EST:     CAACTTCTCGGTCGTCGACGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211523118|gb|FL350158.1|FL350158
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211414893|gb|FL345683.1|FL345683
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211458480|gb|FL255593.1|FL255593
EST:     CAACTTCTCGGTCGTCGACGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211336170|gb|FL255578.1|FL255578
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211458364|gb|FL364597.1|FL364597
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|149103124|gb|EE288493.2|EE288493
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|20803238|gb|BQ294288.1|BQ294288
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|31354738|gb|CD439095.1|CD439095
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCTTTGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211336176|gb|FL255584.1|FL255584
EST:     AACTTCTCGGGTCGTCGACGGNCCCGCCAGCTCCGCCGCGGGNAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGC
genomic: AACTTCTCGG-TCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGC
EST: gi|148963458|gb|EE014477.2|EE014477
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|211334009|gb|FL255568.1|FL255568
EST:     CAACTTCTCGGTCGTCGACGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
EST: gi|149105648|gb|EE291200.2|EE291200
EST:     CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCG                         ATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC
genomic: CAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 307

CAGACGAACCGGCTCCTGCACGCCCTTCCCCTCCCCTCCGTCCTCCGCTCCAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGCTGGTGCCGTCGGCCGAGCCCGCGGCGACCAGGCCGCTCAAGATCGGCGT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 247

CAGACGAACCGGCTCCTGCACGCCCTTCCCCTCCCCTCCGTCCTCCGCTCCAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGCTGGTGCCGTCGGCCGAGCCCGCGGCGACCAGGCCGCTCAAGATCGGCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 292

CAGACGAACCGGCTCCTGCACGCCCTTCCCCTCCCCTCCGTCCTCCGCTCCAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGCTGGTGCCGTCGGCCGAGCCCGCGGCGACCAGGCCGCTCAAGATCGGCGT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 230

CAGACGAACCGGCTCCTGCACGCCCTTCCCCTCCCCTCCGTCCTCCGCTCCAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgacc ... tctctcgcagATGAGATCGCCAAGCTCTTCCCCAACCTGTTCGGCCAGCCCTCGGCGTCGCTGGTGCCGTCGGCCGAGCCCGCGGCGACCAGGCCGCTCAAGATCGGCGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGACGAACCGGCTCCTGCACGCCCTTCCCCTCCCCTCCGTCCTCCGCTCCAACTTCTCGGTCGTCGTCGGCCCCGCCAGCTCCGCCGCGGGCAACCCCGgtgagtgaccgtccaacgttgctgtaacttaggatctcgggtcatgcatgtggtttgttacgtattccatcgagctcatcagattcgtggctggctcgatcgatctctcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC