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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCTTCGTCTCTCCAGACTAGCCGAGAGAGATCTCGACACCGCCGCCCGTTGCCATGGCGGCGGCCAACGCCCCCATCGCCATGCGCGAGGCGCTCACGgtaacaccttcgccacctcgtcctcctcttcttctccatccattcacccactgatcgttcgttgcttgcctgtcctccgcag

Basic information

species Zea mays
transcript GRMZM2G057576_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 1
CGCCTTCGTCTCTCCAGACTAGCCGAGAGAGATCTCGACACCGCCGCCCGTTGCCATGGCGGCGGCCAACGCCCCCATCGCCATGCGCGAGGCGCTCACGgtaacaccttcgccacctcgtcctcctcttcttctccatccattcaccca-------ctgatcgttcgttgcttgcctgtcctccgcag-----------
                                                       |||||||||||||||||||||||||||||||||||||||||||||||| |  |||| || | |  |||||| |      ||   |   | ||| |       || || |  | |  || |  | || ||  |             
-------------------------------------------------------ATGGCGGCGGCCAACGCCCCCATCGCCATGCGCGAGGCGCTCACGgtatcctcttctcctcttactcctccccgcgagatctcactcgtaaccaaggcggagctaatggcgcctgactcgtatctcttctcctcgctcgatgcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 1
CGCCTTCGTCTCTCCAGACTAGCCGAGAGAGATCTCGACACCG-CCGCCCGTTGCCATGGCGGCGGCCAACGCCCCCATCGCCATGCGCGAGGCGCTCACGgtaacaccttcgccacctcgtcct--cctcttcttc-------tccatccattcaccca-------ctgatcgttcgttgcttgcctgtcctccgcag-----------
 |||||| ||   || | |   |     | ||||||  | ||| ||| |  | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |  |||| |  | |  ||||  || || || |       ||   ||  | ||| |       || || |  | |  || | || || ||  |             
-GCCTTCTTCCTCCCCGTCGCTCTAGAGGGGATCTCACCGCCGGCCGTCTCTCGCCATGGCGGCGGCCAACGCCCCCATCGCCATGCGCGAGGCCCTCACGgtatcttcttctcttcttactcctacccactcctcccgcgagatctcccccgtaaccaaggcggagctaatggcgcctgactcgtctctcttctcctcgctcgatgcag

upper sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S452_30V6.1 (Physcomitrella patens), 5'ss of exon 1
CGCCTTCGTCTCTCCAGACTAGCCGAGAGAGATCTCGACACCGCCGCCCGTTGCCATGGCGGCGGCCAACGCCCCCATCGCCATGCGCGAGGCGCTCACGgtaacaccttcgccacctcgtcctcctcttcttctccatccattcacccactgatcgttcgttgcttgcctgtcctccgcag--------------------
                                                       |||||||| ||||||||||||||||||||| | |||||| | |||||| | |  |     |  |||  ||     | |||  ||  |         |  | |  |    |     |||  || |                       
-------------------------------------------------------ATGGCGGCAGCCAACGCCCCCATCGCCATGAGGGAGGCGTTAACGgtacctctctttttgc--cgttttcgaaaacatctggatgtagaagttttttagttgaactcgtcggagttgttttctgagtgtgaagtttatttgtggatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149103163|gb|EE288534.2|EE288534
EST:     TTGCCATGGCGGCGGCCAACGCCCCCATCGCCATGCGCGAGGCGCTCACG                         CTCACCAGCCTGGGCATCGCGCCGCAGTTTGTCACGTTTACCCATGTCACC
genomic: TTGCCATGGCGGCGGCCAACGCCCCCATCGCCATGCGCGAGGCGCTCACGgtaacacctt ... tcctccgcagCTCACCAGCCTGGGCATCGCGCCGCAGTTTGTCACGTTTACCCATGTCACC