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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGGAATCGGAGGAGAGAGGAGGTCGTGGTGGAGATGGAGACCGAGGATGCCGCGCTGCGCTGGGGGGACATCATCAGGGATTGCCTCGCTTCGCTCGgtaatcagtatcagctgttactctgctagttgtaaacttgtaattcgattatttcgatcctcctctatttttttttaaaaaaactctcctacatcatggg...

Basic information

species Zea mays
transcript GRMZM2G057475_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057475_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g37580.1 (Oryza sativa), 5'ss of exon 2
GATGGGAATCGGAGGAGAGAGGAGGTCGTGGTGGAGATGGAGACCGAGGATGCCGCGCTGCGCTGGGGGGACATCATCAGGGATTGCCTCGCTTCGCTCGgtaatcagtatcagctgttactctgctagttgtaaacttgtaattcgattat--ttcgatcctcctctatttttttttaaaaaaac-tctcctacatcatggg----
   | ||    ||||     |||||| |||||||||||||||| |||||| |||||   |   |||||||||  ||| || ||| ||||||| ||||| |||||     ||   ||| |      ||||| |||   | |||| ||| | ||  |  | || |  | | || ||  | | | |||  ||| ||     |||      
AGGGAGAGGGAGAGGGAGAGGGAGGTGGTGGTGGAGATGGAGAGCGAGGAGGCCGCCGCGGCGTGGGGGGACGCCATGAGAGATCGCCTCGCCTCGCTTGgtaa-----attcactgattaatcactagtagtag--tagtaactcggtaatcatctgctcttgatttgttcttagtaacagaaatgtctactgttcgatgatcttt