Sequence
atgc intronic sequence ATGC exonic sequenceTTTAAGCATCTTTCAGGCTGATGCTATCATGTCCAGATTGAACATTGATGATTATCAGAAAGAAGGCAGTCAACCAACACTCCTGATCACATCTGACATAgtatgtctcgattacctctgcattcctaatttgggtggaattattattccatggttgtggtggaatgtatcttctcatctgtttttgctagaatgttatcattcgtatgattgcatactgaattgtagttgactttgag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G057056_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g34770.1 (Oryza sativa), 5'ss of exon 4
TTTAAGCATCTTTCAGGCTGATGCTATCATGTCCAGATTGAACATTGATGATTATCAGAAAGAAGGCAGTCAACCAACACTCCTGATCACATCTGACATAgtatgtctcgattacctctgcattcctaatttgggtggaattattattccatggttgtggtggaatg-tatcttctca-tctgtttttgctagaatgttatcattcgtatgattgcatactgaattgtagttgactttgag
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----------------GCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAgtatgccttgatttcctttgctatgctattttacgtggaacttggatgctttattaatcacaaaatactatgtttgaaatttgaccatgcctcaatttca-----------------------------------------
upper sequence: GRMZM2G057056_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g34850.1 (Oryza sativa), 5'ss of exon 4
TTTAAGCATCTTTCAGGCTGATGCTATCATGTCCAGATTGAACATTGATGATTATCAGAAAGAAGGCAGTCAACCAACACTCCTGATCACATCTGACATAgtatgtctcgattacctctgcattcctaatttgggtggaattattattccatggttgtggtggaatg-tatcttctca-tctgtttttgctagaatgttatcattcgtatgattgcatactgaattgtagttgactttgag
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----------------GCTGATGCTATCATGTCCAGATTGAATATTTCTGATTACCAGAAAGAAGGCGACAGGCCAACACTCCTGATCACTTCTGACATAgtatgcctttatttcctttgctctgctattttacgtcgaacttggatgctttattcatcacaaaataatatgtttggaatatgacaatgcctcaatttcg-----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88752936|gb|DY537077.1|DY537077EST: ATTATCAGAAAGAAGGCAGTCAACCAACACTCCTGATCACATCTGACATA GTGGTCGTCCATGAAGGGATTATTAGAGAAAAACCAACCACCAAGGAAGAA
genomic: ATTATCAGAAAGAAGGCAGTCAACCAACACTCCTGATCACATCTGACATAgtatgtctcg ... tgactttgagGTGGTCGTCCATGAAGGGATTATTAGAGAAAAACCAACCACCAAGGAAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTAAGCATCTTTCAGGCTGATGCTATCATGTCCAGATTGAACATTGATGATTATCAGAAAGAAGGCAGTCAACCAACACTCCTGATCACATCTGACATAgtatgtctcgattacctctgcattcctaatttgggtggaattattattccatggttgtggtggaatgtatcttctcatctgtttttgctagaatgttatcattcgtatgattgcatactgaattgtagttgactttgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG