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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCAAGCCGGGATGGCTGCACTCAAGGCATCGTTCCGGGGTGAGCTCAGCGCCGCTTCCTTCCTCGACTCCAGCAGGGGACCTCTCGTCCAGCACAAAGgttggatcttttcctctttcggtgcctcctttttttccccgatcggtgcatgagcttatcttcttgcttttccggccttatgcactcgagactttgccgc...

Basic information

species Zea mays
transcript GRMZM2G056975_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G056975_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g01710.1 (Oryza sativa), 5'ss of exon 1
CAGCAAGCCGGGATGGCT---GCACTCAAGG---CATCGTTCCGGGGTGAGCTCAGCGCCGCTTCCTTCCTCGACTCCAGCAGGGGA---CCTCTCGTCCAGCACAAAGgttggatcttttcctctttcggtgcctcctttttttccccgatcggtgcatgagcttatcttcttgctttt---ccggccttatgcactcgagactttgccgc
          || ||||    || |||||||     || ||||  || ||  |   ||| |  || ||||||||||||| ||| |||    || ||  ||||| |||||||||||||||||||||||||  |  | ||||      |    |   |||     ||| | |  | ||  |      |    | |   |     |  |||    
---------AGGGTGGCCATGGCGCTCAAGGTCGTCTCTTTCCCCGGGGACTTGGCCGCGGTCTCATTCCTCGACTCCAACAGAGGAGGAGCTTTCAACCAGCTCAAAGgttggatcttttcctctttct-tatccccttccggatcaactttactgctctttcttgtttcttggccctcgacttgcttctgttttcctctcatcttgtt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71445035|gb|DR826085.1|DR826085
EST:     CGCCGCTTCCTTCCTCGACTCCAGCAGGGGACCTCTCGTCCAGCACAAAG                         TGGATTTTACGTTTCAAAGGAAGGGCAAACGAGCTATTTCACTGAGAAGGA
genomic: CGCCGCTTCCTTCCTCGACTCCAGCAGGGGACCTCTCGTCCAGCACAAAGgttggatctt ... ctcattgcagTGGATTTTACGTTTCAAAGGAAGGGCAAACGAGCTATTTCACTGAGAAGGA
EST: gi|149066676|gb|EE286811.2|EE286811
EST:     CGCCGCTTCCTTCCTCGACTCCAGCAGGGGACCTCTCGTCCAGCACAAAG                         TGGATTTTACGTTTCAAAGGAAGGGCAAACGAGCTATTTCACTGAGAAGGA
genomic: CGCCGCTTCCTTCCTCGACTCCAGCAGGGGACCTCTCGTCCAGCACAAAGgttggatctt ... ctcattgcagTGGATTTTACGTTTCAAAGGAAGGGCAAACGAGCTATTTCACTGAGAAGGA