1 5' 3' | 2 5' 3' | 3 5' 3' |
CACTGCTGAAATTGTATCTGCAGTCGCCCACCTCCATGCCAACGGTATTATGCATAGAGATTTGAAGCCTGAGAACATCTTACTGGATGCTGATGGTCATgtaaggatctgttgatataatctctgcccatcctacatcatcttctgctcatatattgggagtttgaaaaaaaatgccccttcttgacttgtcgacgtgtttag
species | Zea mays |
transcript | GRMZM2G056355_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCATAGAGATTTGAAGCCTGAGAACATCTTACTGGATGCTGATGGTCAT GCTATGCTGACTGACTTTGGTGTGGCAAAAGAATTTGATGAAAACACTAGAEST: gi|211042389|gb|FL284656.1|FL284656
genomic: TGCATAGAGATTTGAAGCCTGAGAACATCTTACTGGATGCTGATGGTCATgtaaggatct ... acgtgtttagGCTATGCTGACTGACTTTGGTGTGGCAAAAGAATTTGATGAAAACACTAGA
EST: TGCATAGAGATTTGAAGCCTGAGAACATCTTACTGGATGCTGATGGTCAT GCTATGCTGACTGACTTTGGTGTGGCAAAAGAATTTGATGAAAACACTAGAEST: gi|86470262|gb|DY236632.1|DY236632
genomic: TGCATAGAGATTTGAAGCCTGAGAACATCTTACTGGATGCTGATGGTCATgtaaggatct ... acgtgtttagGCTATGCTGACTGACTTTGGTGTGGCAAAAGAATTTGATGAAAACACTAGA
EST: TGCATAGAGATTTGAAGCCTGAGAACATCTTACTGGATGCTGATGGTCAT GCTATGCTGACTGACTTTGGTGTGGCAAAAGAATTTGATGAAAACACTAGA
genomic: TGCATAGAGATTTGAAGCCTGAGAACATCTTACTGGATGCTGATGGTCATgtaaggatct ... acgtgtttagGCTATGCTGACTGACTTTGGTGTGGCAAAAGAATTTGATGAAAACACTAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTGCTGAAATTGTATCTGCAGTCGCCCACCTCCATGCCAACGGTATTATGCATAGAGATTTGAAGCCTGAGAACATCTTACTGGATGCTGATGGTCATgtaaggatctgttgatataatctctgcccatcctacatcatcttctgctcatatattgggagtttgaaaaaaaatgccccttcttgacttgtcgacgtgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT