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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGAGTGCCTGGTTTTATTGCGCCCTCCGGCAGGCCGTCCGTCGCGCGGCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaactatactttcgcttctcgttcccatgcctgtcgtttcagttgtatttgtgtgtttgctgttgcttttcgaacatgtttaatactgatgcgtgtgcttactgatgaggtgatcacatttcag

Basic information

species Zea mays
transcript GRMZM2G055667_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211366504|gb|FL067546.1|FL067546
EST:     GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAA                         GTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
genomic: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaact ... cacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
EST: gi|149001245|gb|EE038521.2|EE038521
EST:     GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAA                         GTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
genomic: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaact ... cacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
EST: gi|149076117|gb|EE164700.2|EE164700
EST:     GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAA                         GTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
genomic: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaact ... cacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
EST: gi|211366507|gb|FL067549.1|FL067549
EST:     GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAA                         GTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
genomic: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaact ... cacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
EST: gi|211366505|gb|FL067547.1|FL067547
EST:     GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAA                         GTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
genomic: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaact ... cacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
EST: gi|211366506|gb|FL067548.1|FL067548
EST:     GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAA                         GTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC
genomic: GCGCGCCGCGGCCGGAGACAAGTTCGAGGCCGAGACGCCCATAGAGAAAAgtcggtaact ... cacatttcagGTTTCCCTCCCTTCCCAACTGTCATGGACATCAACCAGATCCGTGACATCC