1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGTTTGTGACTTGTGAGTGAGAGCGGGATCCGACATCCGAGGAGAGGTCGAGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgaccattcttccccgcctccgccgcgacgcgtgttaggttgctcacgtgatctcgctgttgggacttgggagttagagctgtctcttcttgcttg...
species | Zea mays |
transcript | GRMZM2G055607_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|211383959|gb|FL013551.1|FL013551
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|31441050|gb|CD510481.1|CD510481
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|76911991|gb|DV164525.1|DV164525
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGTCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGTCCATCGTGAGCTTCTGATGCCAATTAGGACEST: gi|71448567|gb|DR829617.1|DR829617
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|211383960|gb|FL013552.1|FL013552
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|88755485|gb|DY539626.1|DY539626
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|50329390|gb|CO524516.1|CO524516
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|71437590|gb|DR818640.1|DR818640
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|211132575|gb|FL461421.1|FL461421
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|28987385|gb|CB351608.1|CB351608
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|211383961|gb|FL013553.1|FL013553
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|71305861|gb|DR789056.1|DR789056
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|91871874|gb|EB401831.1|EB401831
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|211383958|gb|FL013550.1|FL013550
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGACEST: gi|50330184|gb|CO525310.1|CO525310
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
EST: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAG GATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
genomic: AGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgacca ... ggtttaccagGATGCACTGTGACGCGCTGGCCCATGGTGAGCTTCTGATGCCAATTAGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTGTGACTTGTGAGTGAGAGCGGGATCCGACATCCGAGGAGAGGTCGAGGCCGGGCAAAGTCGAAGTCCGCGCTCCGGCCTCCAGCTGACGAAGCAGgtaacgaccattcttccccgcctccgccgcgacgcgtgttaggttgctcacgtgatctcgctgttgggacttgggagttagagctgtctcttcttgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgccgc