1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CGCGCAGATAGCGGCGAGGCCCCCGCCCATGGAGGCCGCGGCTGCGGCTGCTGCGGCGGGCGGAGCACACTCGGGAGGCGAGGAGCTCGACCTCTTCATGgtaagtacccatactttctcgtctctcttcctattatggtcttgctatgatgaagctaataaggttgcccagtggttctctcttctccatgcggattttc...
species | Zea mays |
transcript | GRMZM2G055243_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGCGGCGGGCGGAGCACACTCGGGAGGCGAGGAACTCGACCTCTTCATG ACACATTATGTGTTGCTCCTCTGTGCATTCAAGGAACAACTCCAGCAGCATEST: gi|211317872|gb|FL083590.1|FL083590
genomic: CTGCGGCGGGCGGAGCACACTCGGGAGGCGAGGAGCTCGACCTCTTCATGgtaagtaccc ... tttcgtccagACACATTATGTGTTGCTCCTCTGTTCATTCAAGGAACAACTCCAGCAGCAT
EST: CTGCGGCGGGCGGAGCACACTCGGGAGGCGAGGAACTCGACCTCTTCATG ACACATTATGTGTTGCTCCTCTGTTCATTCAAGGAACAACTCCAGCAGCATEST: gi|149109130|gb|EE293152.2|EE293152
genomic: CTGCGGCGGGCGGAGCACACTCGGGAGGCGAGGAGCTCGACCTCTTCATGgtaagtaccc ... tttcgtccagACACATTATGTGTTGCTCCTCTGTTCATTCAAGGAACAACTCCAGCAGCAT
EST: CTGCGGCGGGCGGAGCACACTCGGGAGGCGAGGAGCTCGACCTCTTCATG ACACATTATGTGTTGCTCCTCTGTTCATTCAAGGAACAACTCCAGCAGCATEST: gi|211317871|gb|FL083589.1|FL083589
genomic: CTGCGGCGGGCGGAGCACACTCGGGAGGCGAGGAGCTCGACCTCTTCATGgtaagtaccc ... tttcgtccagACACATTATGTGTTGCTCCTCTGTTCATTCAAGGAACAACTCCAGCAGCAT
EST: CTGCGGCGGGCGGAGCACACTCGGGAGGCGAGGAACTCGACCTCTTCATG ACACATTATGTGTTGCTCCTCTGTTCATTCAAGGAACAACTCCAGCAGCAT
genomic: CTGCGGCGGGCGGAGCACACTCGGGAGGCGAGGAGCTCGACCTCTTCATGgtaagtaccc ... tttcgtccagACACATTATGTGTTGCTCCTCTGTTCATTCAAGGAACAACTCCAGCAGCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCGCAGATAGCGGCGAGGCCCCCGCCCATGGAGGCCGCGGCTGCGGCTGCTGCGGCGGGCGGAGCACACTCGGGAGGCGAGGAGCTCGACCTCTTCATGgtaagtacccatactttctcgtctctcttcctattatggtcttgctatgatgaagctaataaggttgcccagtggttctctcttctccatgcggattttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT