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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGCTGCTGCTGGGCCCGACGCCCAACTACCGTGCCGAGGTCCCAGGCAGGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAGgtacggccgccccctcttcccttcctgatgtgcaaaactaagcatccgaaccctaattaagctatttggctatctgtatttggatctgatctgtataaat...

Basic information

species Zea mays
transcript GRMZM2G054470_T05
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74243203|gb|DT651117.1|DT651117
EST:     GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAG                         TCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
genomic: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAGgtacggccgc ... cattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
EST: gi|78118750|gb|DV537134.1|DV537134
EST:     GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAG                         TCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
genomic: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAGgtacggccgc ... cattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
EST: gi|93016995|gb|EB642515.1|EB642515
EST:     GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAG                         TCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
genomic: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAGgtacggccgc ... cattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
EST: gi|211073736|gb|FL043533.1|FL043533
EST:     GGAAGCATCTTGGCGTACGTGCCGCCGGCRACAAGCACCCACCACACCAG                         TCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
genomic: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAGgtacggccgc ... cattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
EST: gi|211073735|gb|FL043532.1|FL043532
EST:     GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAG                         TCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC
genomic: GGAAGCATCTTGGCGTACGTGCCGCCGGCGACAAGCACCCACCACACCAGgtacggccgc ... cattttgcagTCAAATGAATAGTTGATTTCATTTCAAGCAATTCCTGAACAACTATATTAC