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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGAGAGATGGCGAAGACGGCCGCGTGGAGCGTCAGTTCCTGCAAGGCCGGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggatcacctttttttttctttgtcgaattagttgaagctagaaggtcagagttggtgattcgggtcctgcgatttggtttcag

Basic information

species Zea mays
transcript GRMZM2G054247_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054247_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g50360.1 (Oryza sativa), 5'ss of exon 1
TGCGAGAGATGGCGAAGACGGCCGCGTGGAGCGTCAGTTCCTGCAAGGCCGGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggatcacctt-----------tttttttctttgtcgaattagttgaagctagaaggtcagagttggtgattcgggtcctgcgatttggtttcag------
|||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||  | | |  |           ||| ||| |   ||   ||  |   ||  || || |      || ||||| ||||  ||  ||||  |||  |      
TGCGGGAGATGGCGAAGACGGCCGCCTGGAGCGTCAGCTCCTGCAAGCCCGGCAACGGCGTCGCCTCCCTCCGCGACGACAACCTCGACACCTACTGGCAgtcagtaaaacccgctccaaatctccatttgtttttccttcttctttttccgagggaggagattgttaatg-tgatttgggttttgacattttttttttgggttag

upper sequence: GRMZM2G054247_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA02G06190.3 (Glycine max), 5'ss of exon 2
TGCGAGAGATGGCGAAGACGGCCGCGTGGAGCGTCAGTTCCTGCAAGGCCGGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggatcaccttttttt-ttctttgtcgaattagttgaagctagaa--ggtcagagttggtgattcgggtcctgcgatttggtttcag--------
|    || ||||  ||||  ||||| ||||||||||||||||||||  |||| ||||||||  |  | || || |||||||| ||||| ||||| ||||||| | |   || |    | ||  |   |||     |  | |  | |||||  | |        |  |||| ||     |  |||  | | |         
TAACGGAAATGGGAAAGAAAGCCGCTTGGAGCGTCAGTTCCTGCAAACCCGGTAACGGCGTTTCCTCTCTCCGTGACGACAATCTCGAAACCTATTGGCAgtaactccctccctcactcttactgcgtgtttggatgatggctgatagaattgattttgaagtgaaattcaggataaactttttcatctaatgctgaaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91873254|gb|EB403211.1|EB403211
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|89252141|gb|DY623927.1|DY623927
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|76915292|gb|DV165923.1|DV165923
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|60400666|gb|DN233473.1|DN233473
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|74244865|gb|DT652779.1|DT652779
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCG
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCG
EST: gi|211282122|gb|FL372019.1|FL372019
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAAC-TCGACACCTACTGGCA                         GTCTGATGGGGCGCAGC
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGC
EST: gi|211201873|gb|FL396465.1|FL396465
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACNACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|78088159|gb|DV516552.1|DV516552
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|13515650|gb|BG517926.1|BG517926
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|22490544|gb|BU050467.1|BU050467
EST:     CGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: CGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|71297609|gb|DR784753.1|DR784753
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|12045796|gb|BF727935.1|BF727935
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|71422983|gb|DR805911.1|DR805911
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|78180912|gb|DV551285.1|DV551285
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|211341306|gb|FL394252.1|FL394252
EST:     GGCAACGGCGTCGCGGCC-TGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGC
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGC
EST: gi|71297610|gb|DR784754.1|DR784754
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|71427966|gb|DR809016.1|DR809016
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|149073064|gb|EE161334.2|EE161334
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|211368075|gb|FL362342.1|FL362342
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAATAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
EST: gi|71449488|gb|DR830538.1|DR830538
EST:     GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCA                         GTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT
genomic: GGCAACGGCGTCGCGGCCCTGCGCGACGACAACCTCGACACCTACTGGCAgtcagtggat ... ttggtttcagGTCTGATGGGGCGCAGCCGCACCTGGTGAACATCCAGTTCCAGAAGAAGGT