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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCAGCTCCATCCGGATCGTGCTCTCCGGCGCCGCGCCGCTTGGCAAGGACCTCGTCGACGCACTCCGCGCCCGCGTGCCACAGGCCGTCTTCGGACAGgtcagtgtctactgtttcaccgctaatcttgtaatccaagtttattttgctgttgagggagccaattttgagggccggataggctgacgagtcaaatagc...

Basic information

species Zea mays
transcript GRMZM2G054013_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G054013_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g46970.1 (Oryza sativa), 5'ss of exon 1
CCTCAGCTCCATCCGGATCGTGCTCTCCGGCGCCGCGCCGCTTGGCAAGGACCTCGTCGACGCACTCCGCGCCCGCGTGCCACAGGCCGTCTTCGGACAGgtcagtgtctactgtttc---accgctaatcttgtaatccaagtttattttgctgttgagggagccaattttgaggg-ccggataggctgacgagtcaaatagc
||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||||  ||||| |||||||||||| |||| |||||| |||||||||||||| || || |  | |     |    || ||   |  | | | | ||  |    |||   | | ||||||||||    |||  |    |||    |   |    
CCTCAGCTCCATCCGCATCGTGCTCTCCGGCGCCGCCCCGCTCGGCAAGGAGCTCGAGGACGCCCTCCGCGCCCGCCTGCCTCAGGCCATCTTCGGACAGgtcggtatcgatcggtctcaaaatattactcccttcttaccattctaagtcaaagtttccgtatccaattttgatcctccgttttatttgatatttttta----

upper sequence: GRMZM2G054013_T03 (Zea mays), 5'ss of exon 1
lower sequence: EFJ20030 (Selaginella moellendorffii), 5'ss of exon 2
CCTCAGCTCCATCCGGATCGTGCTCTCCGGCGCCGCGCCGCTTGGCAAGGACCTCGTCGACGCACTCCGCGCCCGCGTGCCACAGGCCGTCTTCGGACAGgtcagtgtctactgtttcaccgctaat-cttgtaatccaagtttattttgctgttgagggagccaattttgagggccggataggctgacgagtcaaatagc
 ||   |  | ||||||| ||||| ||||||||||||||||| || ||||| ||||  |||||  | || || ||  | || | ||| ||  |||| |||||     | |   | ||  | ||   | | |  |||    |||   ||||   ||   |||     |||      || |                      
TCTTTCCAGCGTCCGGATGGTGCTGTCCGGCGCCGCGCCGCTGGGGAAGGAGCTCGAGGACGCGTTTCGGGCTCGGCTACCGCTGGCGGTACTCGGTCAGgtagagttttcgagctttgcagcatttgcctagaatgggggtt---tttg--attcgtggattttttttcttcttccag----------------------

upper sequence: GRMZM2G054013_T03 (Zea mays), 5'ss of exon 1
lower sequence: EFJ12402 (Selaginella moellendorffii), 5'ss of exon 2
CCTCAGCTCCATCCGGATCGTGCTCTCCGGCGCCGCGCCGCTTGGCAAGGACCTCGTCGACGCACTCCGCGCCCGCGTGCCACAGGCCGTCTTCGGACAGgtcagtgtctactgtttcaccgctaatcttgtaatccaagtttattttgctgttgagggagccaattttgagggccggataggctgacgagtcaaatagc
 ||   |  | ||||||| ||||| ||||||||||||||||| || ||||| ||||  |||||  | || || ||  | || | ||| ||  |||| ||||| || || | |    |   |   | |    ||      | ||  ||||   ||   |||     ||||     || |                      
TCTTTCCAGCGTCCGGATGGTGCTGTCCGGCGCCGCGCCGCTGGGGAAGGAGCTCGAGGACGCGTTTCGGGCTCGGCTACCTCTGGCGGTACTCGGTCAGgt-agagttttcgagctttgcagcatttgcctagaatggggtt--tttg--attcgtggaatttcttttttcttccag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149105640|gb|EE291190.2|EE291190
EST:     ACCTCGTCGACGCACTCCGCGCCCGCGTGCCACAGGCCGTCTTCGGACAG                         GGATACGGGATGACGGAGGCCGGGCCCGTGCTGTCCATGTGCCCGGCGTTC
genomic: ACCTCGTCGACGCACTCCGCGCCCGCGTGCCACAGGCCGTCTTCGGACAGgtcagtgtct ... gccggtgcagGGATACGGGATGACGGAGGCCGGGCCCGTGCTGTCCATGTGCCCGGCGTTC