1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTCTCAGCGATGTCGCCACGGCCTCCGCGTGTGCTGCGCCTCCTCCACCTCTTCCTCATCTCCGCCGCCGGCAACTCCCGAGGAGCCCGACGACTACGAGgtacctgcacttcttattcttcgtgacttcctttcttctacaagctaatgcgtgagaaaactcgtgcggtgtttcattaccacaagcacgactgtggggt...
species | Zea mays |
transcript | GRMZM2G053927_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCCTCATCTCCGCCGCCGGCAACTCCCGAGGAGCCCGACGACTACGAG TTATTGGACACAGCTGGGAATTGTGACCCTCTATGCTCGGCTGATGAAGTTEST: gi|149055301|gb|EE156237.2|EE156237
genomic: CTTCCTCATCTCCGCCGCCGGCAACTCCCGAGGAGCCCGACGACTACGAGgtacctgcac ... aaaatttcagTTATTGGACACAGCTGGGAATTGTGACCCTCTATGCTCGGCTGATGAAGTT
EST: CTTCCTCATCTCCGCCGCCGGCAACTCCCGAGGAGCCCGACGACTACGAG TTATTGGACACAGCTGGGAATTGTGACCCTCTATGCTCGGCTGATGAAGTTEST: gi|211177662|gb|FL143328.1|FL143328
genomic: CTTCCTCATCTCCGCCGCCGGCAACTCCCGAGGAGCCCGACGACTACGAGgtacctgcac ... aaaatttcagTTATTGGACACAGCTGGGAATTGTGACCCTCTATGCTCGGCTGATGAAGTT
EST: CTTCCTCATCTCCGCCGCCGGCAACTCCCGAGGAGCCCGACGACTACGAG TTATTGGACACAGCTGGGAATTGTGACCCTCTATGCTCGGCTGATGAAGTTEST: gi|19057733|gb|BM736400.1|BM736400
genomic: CTTCCTCATCTCCGCCGCCGGCAACTCCCGAGGAGCCCGACGACTACGAGgtacctgcac ... aaaatttcagTTATTGGACACAGCTGGGAATTGTGACCCTCTATGCTCGGCTGATGAAGTT
EST: CTTCCTCATCTCCGCCGCCGGCAACTCCCGAGGAGCCCGACGACTACGAG TTATTGGACACAGCTGGGAATTGTGACCCTCTATGCTCGGCTGATGAAGTT
genomic: CTTCCTCATCTCCGCCGCCGGCAACTCCCGAGGAGCCCGACGACTACGAGgtacctgcac ... aaaatttcagTTATTGGACACAGCTGGGAATTGTGACCCTCTATGCTCGGCTGATGAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCTCAGCGATGTCGCCACGGCCTCCGCGTGTGCTGCGCCTCCTCCACCTCTTCCTCATCTCCGCCGCCGGCAACTCCCGAGGAGCCCGACGACTACGAGgtacctgcacttcttattcttcgtgacttcctttcttctacaagctaatgcgtgagaaaactcgtgcggtgtttcattaccacaagcacgactgtggggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG