1 5' 3' | 2 5' 3' | 3 5' 3' |
GCAAACTCGAAGCCACCCCGCCGCCGCAGCCACAGCCGCGCCGAGCTTGAGCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAGgtttgcttctcctgcgccgctctgttttaaattcgatccggttcgttttgctcttcggttgcgattcgcctcgttttgattacgttgttgctttgatccg...
species | Zea mays |
transcript | GRMZM2G053801_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCTTTTCTCCTGAAGAGAGAG GACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTATEST: gi|211024552|gb|FL264559.1|FL264559
genomic: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAGgtttgcttct ... ataatgccagGACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTAT
EST: GCCGTCGTTGCTTCGCTGAATCGCCCCCATCTTTTCTCCTGAAGAGAGAG GACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTATEST: gi|60349645|gb|DN216618.1|DN216618
genomic: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAGgtttgcttct ... ataatgccagGACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTAT
EST: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAG GACATTTATTGAGACAGCATGCCTAAGATAAAGACAAGTCGTGTCAAGTATEST: gi|211027007|gb|FL264571.1|FL264571
genomic: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAGgtttgcttct ... ataatgccagGACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTAT
EST: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCTTTTCTCCTGAAGAGAGAG GACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTATEST: gi|211024549|gb|FL264556.1|FL264556
genomic: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAGgtttgcttct ... ataatgccagGACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTAT
EST: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCTTTTCTCCTGAAGAGAGAG GACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTATEST: gi|211027009|gb|FL264573.1|FL264573
genomic: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAGgtttgcttct ... ataatgccagGACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTAT
EST: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAG GAGATTTATTGAGACAGCATGCCTAAGATAAAGACAAGTCGTGTCAAGTATEST: gi|211224315|gb|FK974032.1|FK974032
genomic: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAGgtttgcttct ... ataatgccagGACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTAT
EST: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAG GACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTATEST: gi|211027004|gb|FL264568.1|FL264568
genomic: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAGgtttgcttct ... ataatgccagGACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTAT
EST: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCTTTTCTCCTGAAGAGAGAG GACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTATEST: gi|211224316|gb|FK974033.1|FK974033
genomic: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAGgtttgcttct ... ataatgccagGACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTAT
EST: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAG GACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTAT
genomic: GCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAGgtttgcttct ... ataatgccagGACATTTATTGAGACATCATGCCTAAGATAAAGACAAGTCGTGTCAAGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAACTCGAAGCCACCCCGCCGCCGCAGCCACAGCCGCGCCGAGCTTGAGCCGTCGTTGCTCCGCTGAATCGCCCCCATCGTCTCTCCTGAAGAGAGAGgtttgcttctcctgcgccgctctgttttaaattcgatccggttcgttttgctcttcggttgcgattcgcctcgttttgattacgttgttgctttgatccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctgcgcc