1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGAGCAGAACCGTGCTACCTAGCTAATCCACAGGAGGAAGAGAGGAGAACGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACAgtgagctgcttgctactctcttactacaaatctctttcgctgcttgctttccattgaaaatgatgtgatcttgcttaccacccacaccctgcaatccgaa...
species | Zea mays |
transcript | GRMZM2G053298_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACA GTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGCEST: gi|93015063|gb|EB640583.1|EB640583
genomic: CGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACAgtgagctgct ... gtgtaagcagGTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGC
EST: CGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACA GTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGCEST: gi|149107107|gb|EE188997.2|EE188997
genomic: CGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACAgtgagctgct ... gtgtaagcagGTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGC
EST: CGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACA GTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGC
genomic: CGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACAgtgagctgct ... gtgtaagcagGTTCTGAAGGGAGAGTTACCTGCATCTGCATGGAAGAGGGAGGAGACCCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAGCAGAACCGTGCTACCTAGCTAATCCACAGGAGGAAGAGAGGAGAACGGGAGCCCTTTTTATGACAAGAAGGGAGGCGCCAGGCGTGTGATTAACAgtgagctgcttgctactctcttactacaaatctctttcgctgcttgctttccattgaaaatgatgtgatcttgcttaccacccacaccctgcaatccgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacccac