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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCACCAGCGTGCGCGTCGTCATCTTCCAGGCCAAGATCAACGTGCTCCTCCCCTTCGGCCCGCTCGCCATCATGCTCCACTACCTCTCCGGAACGCACgtaagaaccccggccccgcacttcgtttcttacatttttctactttcggcggcgccttccgcgtttgaatctttactggcaagttcatcatttaagttgcagtactcataagcttacaccttcactttcctgtttgcttccataaaatgcgagttccacag

Basic information

species Zea mays
transcript GRMZM2G053004_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G053004_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g27960.1 (Oryza sativa), 5'ss of exon 1
GCTCACCAGCGTGCGCGTCGTCATCTTCCAGGCCAAGATCAACGTGCTCCTCCCCTTCGGCCCGCTCGCCATCATGCTCCACTACCTCTCCGGAACGCACgtaagaaccccggccccgcacttcgtttcttacatttttctactttcggcggcgccttccgcgtttgaatctttactggcaagttca--tcatttaagttgcagtactcataagcttacaccttcactttcctgtttgcttccataaaatgcgagttccacag
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||  |  ||||||    |  |    | |||   | |||| | |      |  |     ||     | |      |||    ||| ||   |  ||    || |||  |||  | | |                                                        
GCTCACCAGCGTGCGCGTCGTCATCCTCCAGGCCAAGATCAACGTCCTCCTCCCCTTCGGCCCCCTCGCCGTCATGCTCCACTACCTCTCCGCCAACCACgta----ctactatgctgcaacccatttcctccccccccccccccctcgcttaagcatttattattg---ttttgcttaaacatttgactcgtttgtgtta-aatgcc-------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76937004|gb|DV174997.1|DV174997
EST:     TCCCCTTCGGCCCGCTCGCCATCATGCTCCACTACCTCTCCGGAACGCAC                         CAAGGATGGGTTTTTCTTTTCAGCTTAATCGGCATTACCCCGTTGGCCGAG
genomic: TCCCCTTCGGCCCGCTCGCCATCATGCTCCACTACCTCTCCGGAACGCACgtaagaaccc ... agttccacagCAAGGATGGGTTTTTCTTTTCAGCTTAATCGGCATTACCCCGTTGGCCGAG
EST: gi|76011413|gb|DT938583.1|DT938583
EST:     TCCCCTTCGGCCCGCTCGCCATCATGCTCCACTACCTCTCCGGAACGCAC                         CAAGGATGGGTTTTTCTTTTCAGCTTAATCGGCATTACCCCGTTGGCCGAG
genomic: TCCCCTTCGGCCCGCTCGCCATCATGCTCCACTACCTCTCCGGAACGCACgtaagaaccc ... agttccacagCAAGGATGGGTTTTTCTTTTCAGCTTAATCGGCATTACCCCGTTGGCCGAG