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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGGGTTACCGGTTTGGTGCGTTTTCATTTCCCCGCCGCCTCCAGATCACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaactcgcatccgatttccccaatactttcttcgattctttcctgttcctcaccttggttcgatctgccacgccggtgcag

Basic information

species Zea mays
transcript GRMZM2G052713_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211344140|gb|FL188310.1|FL188310
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211344147|gb|FL188317.1|FL188317
EST:     GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|32938017|gb|CF042836.1|CF042836
EST:     GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211344138|gb|FL188308.1|FL188308
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|67011386|gb|CO440135.1|CO440135
EST:     CTCTGTCCTTTCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: CTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|32936019|gb|CF040831.1|CF040831
EST:     GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: GTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211344136|gb|FL188306.1|FL188306
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211344143|gb|FL188313.1|FL188313
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCA-GGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211344148|gb|FL188318.1|FL188318
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211341751|gb|FL188301.1|FL188301
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211344139|gb|FL188309.1|FL188309
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|60356394|gb|DN223367.1|DN223367
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211344141|gb|FL188311.1|FL188311
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211341753|gb|FL188303.1|FL188303
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
EST: gi|211344137|gb|FL188307.1|FL188307
EST:     ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATG                         ATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG
genomic: ACGACTCTGTCCTTCCCAATTCTCAGGCAACCCCGTCGTCTTCCGCCATGgtaacgaact ... gccggtgcagATCCGGTTCATCCTGCTGCAGAACCGGCAGGGGAAAACACGGCTGGCCAAG