1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTCCGTTTTCCTTCTCCAAATGGCTCATTAGCTCGTGCTTCTTCCTTCCTTGCTACCGAGTTCGGGGCGCTAACCAATGCGCAGCGACAAGCTGATCTCTgtgcgtgagctccttttccgctcctgtttctgttcttcctctttgcctccctttctgttttgcttcgtgtgtcctactggcttgctgctgcttagaccgctctacatttttgttatttcag
species | Zea mays |
transcript | GRMZM2G052476_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCTACCGAGTTCGGGGCGCTAACCAATGCGCAGCGACAAGCTGATCTCT TTCCTGATTGACTCTTATTAGTCTTAGCTCTGCCACGGGATGGAGGTGGAGEST: gi|71430898|gb|DR811948.1|DR811948
genomic: TGCTACCGAGTTCGGGGCGCTAACCAATGCGCAGCGACAAGCTGATCTCTgtgcgtgagc ... gttatttcagTTCCTGATTGACTCTTATTAGTCTTAGCTCTGCCACGGGATGGAGGTGGAG
EST: TGCTACCGAGTTCGGGGCGCTAACCAATGCGCAGCGACAAGCTGATCTCT TTCCTGATTGACTCTTATTAGTCTTAGCTCTGCCACGGGATGGAGGTGGAGEST: gi|71447120|gb|DR828170.1|DR828170
genomic: TGCTACCGAGTTCGGGGCGCTAACCAATGCGCAGCGACAAGCTGATCTCTgtgcgtgagc ... gttatttcagTTCCTGATTGACTCTTATTAGTCTTAGCTCTGCCACGGGATGGAGGTGGAG
EST: TGCTACCGAGTTCGGGGCGCTAACCAATGCGCAGCGACAAGCTGATCTCT TTCCTGATTGACTCTTATTAGTCTTAGCTCTGCCACGGGATGGAGGTGGAG
genomic: TGCTACCGAGTTCGGGGCGCTAACCAATGCGCAGCGACAAGCTGATCTCTgtgcgtgagc ... gttatttcagTTCCTGATTGACTCTTATTAGTCTTAGCTCTGCCACGGGATGGAGGTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCGTTTTCCTTCTCCAAATGGCTCATTAGCTCGTGCTTCTTCCTTCCTTGCTACCGAGTTCGGGGCGCTAACCAATGCGCAGCGACAAGCTGATCTCTgtgcgtgagctccttttccgctcctgtttctgttcttcctctttgcctccctttctgttttgcttcgtgtgtcctactggcttgctgctgcttagaccgctctacatttttgttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT