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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGCGCTTCGACGTCGAGGAGATGAAGGTTGCGTGGGCCGGCTCACGCCACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCTgtaagccgcccaatcccactcgtcctggatctagcgggagccctcccgcctgctcccgcatctgttacattgtgattcattcatctgctctgctgatttt...

Basic information

species Zea mays
transcript GRMZM2G052389_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052389_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g01390.1 (Oryza sativa), 5'ss of exon 1
CGCGCGCTTCGACGTCGAGGAGATGAAGGTTGCGTGGGCCGGCTCACGCCACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCTgtaa--gccgcccaatcccactcgtcctggatctagcgggagccctcccgcctgctcccgcatctgttacattgtgattcattcatctgctctgctgatttt
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CGCGCAGTTCGACGTTGAACACATGAAGGTTGCCTGGGCTGGCTCCCGCCACGCCGTCGATGTCGCCGACCGCATGGCGCGCCTCGTCGCTTCCGACCCCgtaacaataactttctccctctttctttctttctttgcacagatagatagatagattat-caacttcggctccccggatctctgattaaattacctgtatg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149085342|gb|EE174848.2|EE174848
EST:     ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCT                         GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
genomic: ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCTgtaagccgcc ... tatgtaccagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
EST: gi|71429539|gb|DR810589.1|DR810589
EST:     ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCT                         GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
genomic: ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCTgtaagccgcc ... tatgtaccagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
EST: gi|148931792|gb|EC875082.2|EC875082
EST:     ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCT                         GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
genomic: ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCTgtaagccgcc ... tatgtaccagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
EST: gi|71438259|gb|DR819309.1|DR819309
EST:     ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCT                         GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
genomic: ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCTgtaagccgcc ... tatgtaccagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
EST: gi|71435701|gb|DR816751.1|DR816751
EST:     ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCT                         GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
genomic: ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCTgtaagccgcc ... tatgtaccagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
EST: gi|211132739|gb|FL016687.1|FL016687
EST:     ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCT                         GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
genomic: ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCTgtaagccgcc ... tatgtaccagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
EST: gi|211132736|gb|FL016684.1|FL016684
EST:     ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCT                         GTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG
genomic: ACGCCGTCCACGTCGCCGACCGCATGGCGCGCCTCGTCGCATCCGACCCTgtaagccgcc ... tatgtaccagGTCTTCCGCAAGGATAACAGGACCATGCTCTCCAGGAAGGAGTTGTTCAAG