1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCCGGCCAGGTACCCCAAGGTGGCCGCCCCTACCACCGGCCCGATCCCCGCCGCCGAGCTGCTCGGAGTCATCGAGGCCGCCGCAAAAGCTGGGGCCGATgtgagtttcagttgcctttgttgcttggtatctctgctcccccaatttccgattttggggtaacgctcgcagcttgttgatttgtttggttgaaatgtgg...
species | Zea mays |
transcript | GRMZM2G051276_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCCGAGCTGCTCGGAGTCATCGAGGCCGCCGCAAAAGCTGGGGCCGAT GTTATAATGGAAGCTGTTAATAAGCCACGCAATATCCACTATAAAGGTGTTEST: gi|19350800|gb|BM895332.1|BM895332
genomic: CCGCCGAGCTGCTCGGAGTCATCGAGGCCGCCGCAAAAGCTGGGGCCGATgtgagtttca ... cttatttcagGTTATAATGGAAGCTGTTAATAAGCCACGCAATATCCACTATAAAGGTGTT
EST: CGCCGAGCTGCTCGGAGTCAATCGAGGCCGCCGCAAAAGCTGGGGCCGAT GTTATAATGGAAGCTGTTAATAAGCCACGCAATATCCACTATAAAGGTGTTEST: gi|211169549|gb|FL047615.1|FL047615
genomic: CGCCGAGCTGCTCGGAGTC-ATCGAGGCCGCCGCAAAAGCTGGGGCCGATgtgagtttca ... cttatttcagGTTATAATGGAAGCTGTTAATAAGCCACGCAATATCCACTATAAAGGTGTT
EST: CCGCCGAGCTGCTCGGAGTCATCGAGGCCGCCGCAAAAGCTGGGGCCGAT GTTATAATGGAAGCTGTTAATAAGCCACGCAATATCCACTATAAAGGTGTTEST: gi|89106256|gb|DY576473.1|DY576473
genomic: CCGCCGAGCTGCTCGGAGTCATCGAGGCCGCCGCAAAAGCTGGGGCCGATgtgagtttca ... cttatttcagGTTATAATGGAAGCTGTTAATAAGCCACGCAATATCCACTATAAAGGTGTT
EST: GCAAAAGCTGGGGCCGAT GTTATAATGGAAGCTGTTAATAAGCCACGCAATATCCACTATAAAGGTGTTEST: gi|101394982|gb|EB819425.1|EB819425
genomic: GCAAAAGCTGGGGCCGATgtgagtttca ... cttatttcagGTTATAATGGAAGCTGTTAATAAGCCACGCAATATCCACTATAAAGGTGTT
EST: CCGCCGAGCTGCTCGGAGTCATCGAGGCCGCCGCAAAAGCTGGGGCCGAT GTTATAATGGAAGCTGTTAATAAGCCACGCAATATCCACTATAAAGGTGTT
genomic: CCGCCGAGCTGCTCGGAGTCATCGAGGCCGCCGCAAAAGCTGGGGCCGATgtgagtttca ... cttatttcagGTTATAATGGAAGCTGTTAATAAGCCACGCAATATCCACTATAAAGGTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGGCCAGGTACCCCAAGGTGGCCGCCCCTACCACCGGCCCGATCCCCGCCGCCGAGCTGCTCGGAGTCATCGAGGCCGCCGCAAAAGCTGGGGCCGATgtgagtttcagttgcctttgttgcttggtatctctgctcccccaatttccgattttggggtaacgctcgcagcttgttgatttgtttggttgaaatgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccccc