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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCGATCTCCGGCGACTCCGACGATGAGGGCCACCAGCTCTCCGATGGAGAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtccggcttctctttcttctaacggacatcaaaactgaaaggggggaagttctcaactcttttgttgtcgtcctctccag

Basic information

species Zea mays
transcript GRMZM2G051151_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94477005|gb|EB705963.1|EB705963
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|16920972|gb|BM074920.1|BM074920
EST:     CTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: CTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|60339511|gb|DN206484.1|DN206484
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18170611|gb|BM340451.1|BM340451
EST:     TCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: TCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18170399|gb|BM340239.1|BM340239
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTG-CAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|16921561|gb|BM075196.1|BM075196
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18171764|gb|BM341604.1|BM341604
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18166603|gb|BM336442.1|BM336442
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18161925|gb|BM331764.1|BM331764
EST:     GAGGGGGGCGCATATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|71759227|gb|DR957164.1|DR957164
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18170003|gb|BM339843.1|BM339843
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|13558129|gb|BG549485.1|BG549485
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|60672672|gb|DN475368.1|DN475368
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCCCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|78118643|gb|DV537027.1|DV537027
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|60337373|gb|DN204346.1|DN204346
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18176293|gb|BM351300.1|BM351300
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18172911|gb|BM348299.1|BM348299
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|17930358|gb|BM267318.1|BM267318
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18164283|gb|BM334122.1|BM334122
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|211089208|gb|FL006917.1|FL006917
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18172012|gb|BM347400.1|BM347400
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|17932357|gb|BM269317.1|BM269317
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|60397092|gb|DN229911.1|DN229911
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|60339396|gb|DN206369.1|DN206369
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|17930810|gb|BM267770.1|BM267770
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|51592516|gb|CV071662.1|CV071662
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18163833|gb|BM333672.1|BM333672
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18167336|gb|BM337175.1|BM337175
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18166100|gb|BM335939.1|BM335939
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|47962348|gb|CN845057.1|CN845057
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18163061|gb|BM332900.1|BM332900
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|16923028|gb|BM076020.1|BM076020
EST:     TGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: TGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18175882|gb|BM351036.1|BM351036
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|211490112|gb|FL140783.1|FL140783
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|17931651|gb|BM268611.1|BM268611
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18173338|gb|BM348726.1|BM348726
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18164462|gb|BM334301.1|BM334301
EST:     GAGGGGGGCGCATATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|78118644|gb|DV537028.1|DV537028
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|60672545|gb|DN475249.1|DN475249
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18166636|gb|BM336475.1|BM336475
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18164892|gb|BM334731.1|BM334731
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|211383786|gb|FL461126.1|FL461126
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18163898|gb|BM333737.1|BM333737
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|60345504|gb|DN212477.1|DN212477
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18163357|gb|BM333196.1|BM333196
EST:     GGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18162329|gb|BM332168.1|BM332168
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|51592853|gb|CV071999.1|CV071999
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18175486|gb|BM350781.1|BM350781
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18170500|gb|BM340340.1|BM340340
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|21621357|gb|BQ619363.1|BQ619363
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18172666|gb|BM348054.1|BM348054
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18174069|gb|BM349457.1|BM349457
EST:     TGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: TGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|211490113|gb|FL140784.1|FL140784
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|17932385|gb|BM269345.1|BM269345
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18163189|gb|BM333028.1|BM333028
EST:     ATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: ATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|148971173|gb|EE022027.2|EE022027
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|17930848|gb|BM267808.1|BM267808
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|18163688|gb|BM333527.1|BM333527
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
EST: gi|17932246|gb|BM269206.1|BM269206
EST:     GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAA                         GAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT
genomic: GAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 28

CTTCGATCTCCGGCGACTCCGACGATGAGGGCCACCAGCTCTCCGATGGAGAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCATGTCTGAAGTGCGATGCCTGGAAGATCTGCGCAAGAAAGAGACGCCCTAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 283

CTTCGATCTCCGGCGACTCCGACGATGAGGGCCACCAGCTCTCCGATGGAGAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCATGTCTGAAGTGCGATGCCTGGAAGATCTGCGCAAGAAAGAGACGCCCTAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 449

CTTCGATCTCCGGCGACTCCGACGATGAGGGCCACCAGCTCTCCGATGGAGAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCATGTCTGAAGTGCGATGCCTGGAAGATCTGCGCAAGAAAGAGACGCCCTAC


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 22

CTTCGATCTCCGGCGACTCCGACGATGAGGGCCACCAGCTCTCCGATGGAGAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtc ... tcctctccagGAAAGGGCTATCCAGATACTACGACGGCAAGTCCCAGTCCTTCGCGTGCATGTCTGAAGTGCGATGCCTGGAAGATCTGCGCAAGAAAGAGACGCCCTAC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCGATCTCCGGCGACTCCGACGATGAGGGCCACCAGCTCTCCGATGGAGAGGGGGGCGCCTATGATTTGTCATCTGTGATGGCACAGCTCCCTGTCAAgtaagtcgtccggcttctctttcttctaacggacatcaaaactgaaaggggggaagttctcaactcttttgttgtcgtcctctccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC