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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGATATTGATTCTAACTTTTGAACTCTGAATCACAGGCTGAGGGTGCCATCATGGCTCTGAATTGCAGCGGGATGATTTTGGGAACACTGCCTGTCAGgcatgacctcccctctagccacattctccatttctctttatttgtaggttatctagactgaaaaactgaacatatttgtatctgccaatgctgatggaactgtgggatgtccag

Basic information

species Zea mays
transcript GRMZM2G051043_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051043_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g11120.1 (Oryza sativa), 5'ss of exon 9
GGAGATATTGATTCTAACTTTTGAACTCTGAATCACAGGCTGAGGGTGCCATCATGGCTCTGAATTGCAGCGGGATGATTTTGGGAACACTGCCTGTCAGgcatgacctcccctctagccacattctccatttctctttatttgtaggttatctagactgaaaaactgaacatatttgtatctgccaatgctgatggaactgtgggatgtccag
                                      || ||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| | ||  ||  |     |  |  |||| ||   | || ||   |||      || | |  ||   || || | |  ||    | | |                     
--------------------------------------GCCGAGTGTGCCATCATGGCTCTGAATTGCAGTGGGATGATTTTGGGTACACTGCCTGTCAGgcatgatccccaatcctgt----tcatttatttatcggaagttctaaaatat------tgtagatttgctgatcttggcacttgtatgttcag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32933652|gb|CF038464.1|CF038464
EST:     GCAGCGGGATGATTTTGGGAACCACTGCCTGTCAG                         GGTGAGCCCTTCCAAGACTCCGGTGAAGCCCCGCGTAAATCGAGTGGGATC
genomic: GCAGCGGGATGATTTTGGGAA-CACTGCCTGTCAGgcatgacctc ... ggatgtccagGGTGAGCCCTTCCAAGACTCCGGTGAAGCCCCGTGTAAATCGAGTGGGATC