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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCCGTTGCTTGATATTCTTGCAAACAAGGTGAAGGCAATTCGTCGTTTGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAGgtatgatctgatacatgtttcaagatgcaatgccttctgtacagagcttgtccctctattatgcgtgctatgttaattctccttgattgtttcatatcta...

Basic information

species Zea mays
transcript GRMZM2G050885_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G050885_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g25460.1 (Oryza sativa), 5'ss of exon 2
GCTGCCGTTGCTTGATATTCTTGCAAACAAGGTGAAGGCAATTCGTCGTTTGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAGgtatgatct-gatacatgtttcaagatgcaatgccttctgtacagagcttgtccctctattatgcgtgctatgttaattctcc--ttgattgtttcatatcta
  ||||  |||||||||||||||| |||||||||||||| || ||||| ||||| ||||| |||||||||||||| || ||||  || ||||| |||||||||| | ||  |   ||  ||  |  |  | ||  |  | | ||     ||| || | ||| |   |||       | | ||   || ||| || | | ||  
CTTGCCACTGCTTGATATTCTTGCGAACAAGGTGAAGGCGATCCGTCGCTTGAGAGATCTCCTTACAACAAAACTGCCACCAGGAACTTTTCCAGTCAAGgtattagcttaacttataattgcacgtata-tgtttgttatgcatttactgtgccgcaattctttctgccccaactagtgtcaagtttattcttgcttgtc--

upper sequence: GRMZM2G050885_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv05s0136g00240.t01 (Vitis vinifera), 5'ss of exon 2
GCTGCCGTTGCTTGATATTCTTGCAAACAAGGTGAAGGCAATTCGTCGTTTGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAGgtatgatctgatacatgtttcaagatgcaatgccttctgtacagagcttgtccctctattatgcgtgctatgt-----taattctccttgattgtttcatatcta
 ||||| |||||||| ||||| || |||||||| ||||||||||| ||| | || || || |||||||||||||| ||    |  || || |||||||||||||| |   ||   | | | |   |    | |  ||| |    |  ||         ||| | ||||||  |     ||  |    ||| |||||| |  |   
TCTGCCATTGCTTGACATTCTCGCTAACAAGGTTAAGGCAATTCGCCGTCTAAGAGAACTGCTTACAACAAAACTTCCAATGGGAACTTTCCCTGTCAAGgtatg-ttgcatttttatct-attctagttttctctctatgattatttttgtgtaactttaagtgtgctaaatgtctttaccttctattggttgtttgactt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211464888|gb|FK984360.1|FK984360
EST:     TGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAG                         GTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAA
genomic: TGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAGgtatgatctg ... ctcccctcagGTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAA
EST: gi|211464886|gb|FK984358.1|FK984358
EST:     TGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAG                         GTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAA
genomic: TGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAGgtatgatctg ... ctcccctcagGTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAA
EST: gi|211464887|gb|FK984359.1|FK984359
EST:     TGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAG                         GTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAA
genomic: TGAGGGATCTACTTACAACAAAACTCCCTCCAGATACATTTCCTGTCAAGgtatgatctg ... ctcccctcagGTTGCCATCCCAGTCGTGCCTACGATCAGAGTGCTTGTGACATTCACGAAA