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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCGGCGGCGCCGGCAGTTGGTAGCCGCGACCGAGACACGGCGGGTGACCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAGgtacccgttcttgatttgaacccatgtcggagtaggcgtaaattgagttagttagcacggacgcttcactttctttattattgtttcctaccatttttcctttatgtccctctctctctctctctctctctctctctgcctcttagcttgtttcacgcattctggtag

Basic information

species Zea mays
transcript GRMZM2G050658_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|93013961|gb|EB639481.1|EB639481
EST:     CCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAG                         GAGACGAGGATCGAGGAGGCACCGATCCGTAGCGGCGATATCGTAGAGCCG
genomic: CCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAGgtacccgttc ... attctggtagGAGACGAGGATCGAGGAGGCACCGATCCGTAGCGGCGATATCGTAGAGCCG
EST: gi|148968163|gb|EE019452.2|EE019452
EST:     CCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAG                         GAGACGAGGATCGAGGAGGCACCGATCCGTAGCGGCGATATCGTAGAGCCG
genomic: CCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAGgtacccgttc ... attctggtagGAGACGAGGATCGAGGAGGCACCGATCCGTAGCGGCGATATCGTAGAGCCG
EST: gi|149072274|gb|EE160530.2|EE160530
EST:     CCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAG                         GAGACGAGGATCGAGGAGGCACCGATCCGTAGCGGCGATATCGTAGAGCCG
genomic: CCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAGgtacccgttc ... attctggtagGAGACGAGGATCGAGGAGGCACCGATCCGTAGCGGCGATATCGTAGAGCCG
EST: gi|149074580|gb|EE162983.2|EE162983
EST:     CCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAG                         GAGACGAGGATCGAGGAGGCACCGATCCGTAGCGGCGATATCGTAGAGCCG
genomic: CCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAGgtacccgttc ... attctggtagGAGACGAGGATCGAGGAGGCACCGATCCGTAGCGGCGATATCGTAGAGCCG
EST: gi|76923126|gb|DV169343.1|DV169343
EST:     CCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAG                         GAGACGAGGATCGAGGAGGCACCGATCCGTAGCGGCGATATCGTAGAGCCG
genomic: CCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAGgtacccgttc ... attctggtagGAGACGAGGATCGAGGAGGCACCGATCCGTAGCGGCGATATCGTAGAGCCG
EST: gi|148997626|gb|EE035845.2|EE035845
EST:     CCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAG                         GAGACGAGGATCGAGGAGGCACCGATCCGTAGCGGCGATATCGTAGAGCCG
genomic: CCTGCCCCGCCGCAGTCGGGGTGTATGTATTACCACCGCCAGAATTCCAGgtacccgttc ... attctggtagGAGACGAGGATCGAGGAGGCACCGATCCGTAGCGGCGATATCGTAGAGCCG