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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTGGTGGGGGAAGACCGGAGGCGTCGGCAGAGCTCGCGTCCAGAGGTGCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgattctcgccctctcccacctggtttggaatcgaattgaagttagtttgtccgaaacttggtccatacgactcaaattttgaaaacttacctta...

Basic information

species Zea mays
transcript GRMZM2G049672_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148963602|gb|EE014642.2|EE014642
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|211417687|gb|FL353874.1|FL353874
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCCCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|149087899|gb|EE177162.2|EE177162
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|211190222|gb|FL310792.1|FL310792
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGCTCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|32863821|gb|CF003503.1|CF003503
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|76285103|gb|DV024671.1|DV024671
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|149095771|gb|EE181414.2|EE181414
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|76015372|gb|DT942542.1|DT942542
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|149051663|gb|EE155776.2|EE155776
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|78086285|gb|DV514678.1|DV514678
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|148958313|gb|EC904535.2|EC904535
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|148972874|gb|EE023876.2|EE023876
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|148943141|gb|EC888200.2|EC888200
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|148982622|gb|EE028421.2|EE028421
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|148957544|gb|EC903637.2|EC903637
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|88755689|gb|DY539830.1|DY539830
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
EST: gi|149081888|gb|EE171050.2|EE171050
EST:     GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCG                         GGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA
genomic: GCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgatt ... ttttgtgcagGGAAGGACGAGTGAATAATCATGAGCTCGATCTGCCCTTTCGCGGGAGCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCTTGGTGGGGGAAGACCGGAGGCGTCGGCAGAGCTCGCGTCCAGAGGTGCACGGCAGGCCTGTTCTCGGCGTCGGCTGGGGGAAGGCGAGTAGCCGCGgtgggtgattctcgccctctcccacctggtttggaatcgaattgaagttagtttgtccgaaacttggtccatacgactcaaattttgaaaacttacctta

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