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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGAGACCCTGTCGTTCGGCTACCACGACGGCGCCGCGTCGCCTGTCGTCGTGGACTACTTCGTCGGCACCCTCGGCCAGGATTTCGAGCCAATGGGgtaagtaaggtagtaagaaggagcgccggtttacatttaccgcacgtcggcgtgcggtcgagtcgggactcgggagacgtatgaacccccgtcccgtcccatgcatgtgtggcag

Basic information

species Zea mays
transcript GRMZM2G049418_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049418_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g66100.1 (Oryza sativa), 5'ss of exon 1
GGAAGGAGACCCTGTCGTTCGGCTACCACGACGGCGCCGCGTCGCCTGTCGTCGTGGACTACTTCGTCGGCACCCTCGGCCAGGATTTCGAGCCAATGGGgtaagtaaggtagtaagaaggagcgccggtttacatttaccgcacgtcggcgtgcggtcgagtcgggactcgggagacgtatgaacccccgtcccgtcccatgcatgtgtggcag
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GGAAGGAGACCCTCTCCTTCGGCTTCCACGACCGCGCCGCCGCCCCCGTCGTCGCCGACTACTTCTCCAGCACCCTCGGCCCCGACTTCGCGCCAATGGGgtaattaaaacgatggtggacgaca-----ttgcattt--caaat-tcaaaacaaattcaaaacacaccgaccgagat-tatg---ctgaattcaaacgcgtttgtgcgcg-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78078022|gb|DV506437.1|DV506437
EST:     GTCGTGGACTACTTCGTCGGCACCCTCGGCCAGGATTTCGAGCCAATGGG                         GTGGGTGTACCAGAGGTACTGCGAGGAGATGAAGGAGCTGTCGCTGACGAT
genomic: GTCGTGGACTACTTCGTCGGCACCCTCGGCCAGGATTTCGAGCCAATGGGgtaagtaagg ... tgtgtggcagGTGGGTGTACCAGAGGTACTGCGAGGAGATGAAGGAGCTGTCGCTGACGAT