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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGCGCAGGTGCCGCTGTTGCAGACTCAGGAGGCGGACGCCGAGTGGAGCTCCAAGCCGCGCCGCATTGCTCTCTTCGTCGAGCCGTCGCCCTTTGCgttagtatcagccttctcttcccggccattttcagctgctagtcagattagagtagatcggatcggcgtgtaggccattggaccactaagataatgattggtcagacctgccgtttctttgatctaagcaccgattaccactaagtcgatggcttccgggttttgcag

Basic information

species Zea mays
transcript GRMZM2G049190_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049190_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g15840.1 (Oryza sativa), 5'ss of exon 1
GGGAGGCGCAGGTGCCGCTGTTGCAGACTCAGGAGGCGGACGCCGAGTGGAGCTCCAAGCCGCGCCGCATTGCTCTCTTCGTCGAGCCGTCGCCCTTTGCgttagtatcagccttctcttcccggccattttcagctgctagtcagattagagtagatcggatcggcgtgtaggccattggaccactaagataatgattggtcagacctgccgtttctttgatctaagcaccgattaccactaagtcgatggcttccgggttttgcag--------
 ||||||||||  ||  ||| |||||    |  ||| ||||||||||||| ||| || ||||| ||||||||  || |||||||||||||||||||| |||| |||     |  |||| ||   | |        || |||||||||| |       ||| |   ||          || || ||    |||   |||  |||| |||||||| |  || ||||||      ||  ||  | ||||| || | ||  |    |||| |        
CGGAGGCGCAGCCGCTACTGCTGCAGGGGGACCAGGTGGACGCCGAGTGGGGCTGCAGGCCGCACCGCATTGTACTTTTCGTCGAGCCGTCGCCCTTCGCgtcagtgct--ctctctcctcgtagtc--------ctactagtcagatca-------tcgtactagc----------ttagatca----gatcgagat--gtcaaacctgccgctctttcgatcta----ttga--actgcaaagtcaatagtttttgctcgttgctgtttcgcag

upper sequence: GRMZM2G049190_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ29760 (Selaginella moellendorffii), 5'ss of exon 1
GGGAGGCGCAGGTGCCGCTGTTGCAGACTCA-GGAGGCGGACGCCGAGT----GGAGCTCCAAGCCGCGCCGCATTGCTCTCTTCGTCGAGCCGTCGCCCTTTGCgttagtatcagccttctcttcccggccattttcagctgctagtcagattagagtagatcggatcggcgtgtaggccattggaccactaagataatgattggtcagacctgccgtttctttgatctaagcaccgattaccactaagtcgatggcttccgggttttgcag
       || | ||||  || ||  ||     || |||||  || |       | | |     ||| ||||| |||||||||||||| |||||||| || ||||||| |||| ||    | |||| ||   |||| ||      |     | |  |   ||                                                                                                                
-----ATGCCGTTGCCAATGCTGTGGAGGAGCGGGGGCGGGAGCGGGACACTGGTACCATTGGGCCTCGCCGAATTGCTCTCTTCGTGGAGCCGTCTCCGTTTGCgtgagtagcaa---tttctttcctctcattctc--tcattgtcttgctgggcacag----------------------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211369971|gb|FK982984.1|FK982984
EST:     AGCTCCAAGCCGCGCCGCATTGCTCTCTTCGTCGAGCCGTCGCCCTTTGC                         TTACATTTCCGGTTACAAGAACCGGTTTCAGAACTTCATCAAGCATCTACG
genomic: AGCTCCAAGCCGCGCCGCATTGCTCTCTTCGTCGAGCCGTCGCCCTTTGCgttagtatca ... ggttttgcagTTACATTTCCGGTTACAAGAACCGGTTTCAGAACTTCATCAAGCATCTACG
EST: gi|71300882|gb|DR786472.1|DR786472
EST:     AGCTCCAAGCCGCGCCGCATTGCTCTCTTCGTCGAGCCGTCGCCCTTTGC                         TTACATTTCCGGTTACAAGAACCGGTTTCAGAACTTCATCAAGCATCTACG
genomic: AGCTCCAAGCCGCGCCGCATTGCTCTCTTCGTCGAGCCGTCGCCCTTTGCgttagtatca ... ggttttgcagTTACATTTCCGGTTACAAGAACCGGTTTCAGAACTTCATCAAGCATCTACG
EST: gi|78113851|gb|DV532240.1|DV532240
EST:     AGCTCCAAGCCGCGCCGCATTGCTCTCTTCGTCGAGCCGTCGCCCTTTGC                         TTACATTTCCGGTTACAAGAACCGGTTTCAGAACTTCATCAAGCATCTACG
genomic: AGCTCCAAGCCGCGCCGCATTGCTCTCTTCGTCGAGCCGTCGCCCTTTGCgttagtatca ... ggttttgcagTTACATTTCCGGTTACAAGAACCGGTTTCAGAACTTCATCAAGCATCTACG