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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTGATTATATAGTTCTTAAAAGTTTAGATACAGACGGGATTCGCATAATTTCAAGCGTTCTTGGTCAAAGTATCGCCCTTGATCACTATATTCGGCAGgtactgaaactcaaagttaatgaacttatgtgttgtcacagtatcattaaagctttgtctaaaagttctgaacttcaaaattatcaattttgatag

Basic information

species Zea mays
transcript GRMZM2G048843_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048843_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g55860.1 (Oryza sativa), 5'ss of exon 4
ACTTGATTATATAGTTCTTAAAAGTTTAGATACAGACGGGATTCGCATAATTTCAAGCGTTCTTGGTCAAAGTATCGCCCTTGATCACTATATTCGGCAGgtactgaaa---ctcaaagttaatgaacttatgtgttgtcacagtatcattaaagctttgt-ctaaaagttctgaacttcaaaattatcaattttgatag
 ||||| |||||||||||||||||  |||||||||| || |||||||| ||| |||| |||||||| |||||||| || |||||||| || || |||||||||||||||     |||  |  |  | ||| |    |||    ||| | || ||  ||||| || || ||||| ||      ||  |  ||||||| |||
TCTTGACTATATAGTTCTTAAAAGCCTAGATACAGATGGAATTCGCATCATTGCAAGTGTTCTTGGCCAAAGTATTGCTCTTGATCATTACATACGGCAGgtactgaaaaggggcaacttcgacaagctttttccatgtggtggtagccttgaaattttgttcttaaggttctaaa------aaacactaattttggtag

upper sequence: GRMZM2G048843_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S48_160V6.1 (Physcomitrella patens), 5'ss of exon 5
ACTTGATTATATAGTTCTTAAAAGTTTAGATACAGACGGGATTCGCATAATTTCAAGCGTTCTTGGTCAAAGTATCGCCCTTGATCACTATATTCGGCAGgtactgaaac-----tcaaagttaatgaacttatgtgttgtcacagtatcattaaagctttgtctaaaagttctgaacttcaaaattatcaattttgatag-
||  ||    ||  |  | |  |   | || || |||   ||  |  | ||||| ||| ||||||| |||||||| ||||||||||||||      | |||| ||    |     | |   ||  |     |   |||| | | |  |||  |    | ||   |   ||  |||    |  ||  ||| | | |     | 
ACAGGACCGAATCATGTTGAGGATGCTTGACACCGACAACATCAGAGTTATTTCTAGCATTCTTGGCCAAAGTATTGCCCTTGATCACTACGCCAAGAAGgttctttgccaccctttactctttttttttcttactgtttttaaaaaatctctggttcattcagtggtagcactggttgttcaa--tattagtgtgagctgt