1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCGCCTGTGCCGGGGCTAGCCCGCCGCGGAGCCATGTCGCGGTCCTTGAGCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAGgtgagggaccccctctccccgtccatcccttcctccctcgggcttctgctcggcccccgcgggtgaggtgagcgtgcccacattagtgcgatcgtttgtg...
species | Zea mays |
transcript | GRMZM2G048804_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAG ACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCTEST: gi|71773197|gb|DR971110.1|DR971110
genomic: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAGgtgagggacc ... tgtgcatcagACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCT
EST: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAG ACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCTEST: gi|94472951|gb|EB701909.1|EB701909
genomic: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAGgtgagggacc ... tgtgcatcagACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCT
EST: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAG ACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCTEST: gi|33467112|gb|CF244161.1|CF244161
genomic: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAGgtgagggacc ... tgtgcatcagACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCT
EST: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAG ACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCTEST: gi|211412124|gb|FL339002.1|FL339002
genomic: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAGgtgagggacc ... tgtgcatcagACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCT
EST: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAG ACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCTEST: gi|31558704|gb|CD527916.1|CD527916
genomic: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAGgtgagggacc ... tgtgcatcagACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCT
EST: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAG ACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCTEST: gi|50339822|gb|CO534948.1|CO534948
genomic: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAGgtgagggacc ... tgtgcatcagACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCT
EST: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAG ACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCTEST: gi|31349428|gb|CD433785.1|CD433785
genomic: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAGgtgagggacc ... tgtgcatcagACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCT
EST: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAG ACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCTEST: gi|74236761|gb|DT644675.1|DT644675
genomic: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAGgtgagggacc ... tgtgcatcagACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCT
EST: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAG ACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCT
genomic: GCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAGgtgagggacc ... tgtgcatcagACAATTGAAAGGCTTGAGAGTATGGTGGATGGAGGAAATTTCTATGAAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCCTGTGCCGGGGCTAGCCCGCCGCGGAGCCATGTCGCGGTCCTTGAGCATGAGAGGGAGCATGAGGGCGCGCCGCGACCTGCCTCCTCCTGAGAAGgtgagggaccccctctccccgtccatcccttcctccctcgggcttctgctcggcccccgcgggtgaggtgagcgtgcccacattagtgcgatcgtttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccgc