Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGGCGGCGACGACGGCGGCGGCAAGGGAGGCAAGGGCAAGGGCAAGGGCAAGGGCGGCAAGTCCGCTGACGGACTCGGCACTTGCACCTACGTCAAAGgtaccgttccttctcccttgccttggatgtattgcacgcgaggatgccttatgatgttgggtgaaaacttgcggggttacgatcagatatcgcggttttg...

Basic information

species Zea mays
transcript GRMZM2G048277_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048277_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g24540.1 (Oryza sativa), 5'ss of exon 1
---TCTGGCGGCGACGACGGCGGCGGCAAGGGAGGCAAGGGCAAGGGCAAGGGCAAGGGCGGCAAGTCCGCTGACGGACTCGGCACTTGCACCTACGTCAAAGgtaccgttccttctccc--ttgccttggatgtattgcacgcgaggatgccttatgatgttgggtgaaaac---ttgcggggttacgatcagatatcgcggttttg
   ||   ||||| ||| | || ||||   || ||||||||    |||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| |     ||||| |  | |  ||    | | |     |  |||  |   ||  || | ||| | | |   |||    |   ||||     || | | |    
GGCTCGTCCGGCGGCGATGACGCCGGCGGCGGCGGCAAGGG---AGGCAAGGGCAAGGGCGGCAAGTCCGCCGACGGCCTCGGCACCTGCACCTACGTCAAAGgtatctccagttctctcggtcggattacgagcaatttgttctcgga--ctcgatcgtgattggtaagatcggtttggattggcgcgatattggattgggatc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6672235|gb|AW282401.1|AW282401
EST:     TCCGCTGACGGACTCGGCACTTGCACCTACGTCAAAG                         CTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
genomic: TCCGCTGACGGACTCGGCACTTGCACCTACGTCAAAGgtaccgttcc ... gcatctgcagCTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
EST: gi|33096749|gb|CF056725.1|CF056725
EST:     TCGGCACTTGCACCTACGTCAAAG                         CTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
genomic: TCGGCACTTGCACCTACGTCAAAGgtaccgttcc ... gcatctgcagCTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
EST: gi|18179379|gb|BM380589.1|BM380589
EST:     CAAGGGCGGCAAGTCCGCTGACGGACTCGGCACTTGCACCTACGTCAAAG                         CTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
genomic: CAAGGGCGGCAAGTCCGCTGACGGACTCGGCACTTGCACCTACGTCAAAGgtaccgttcc ... gcatctgcagCTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
EST: gi|211107276|gb|FL481516.1|FL481516
EST:     GACTCGGCACTTGCACCTACGTCAAAG                         CTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
genomic: GACTCGGCACTTGCACCTACGTCAAAGgtaccgttcc ... gcatctgcagCTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
EST: gi|9731760|gb|BE510512.1|BE510512
EST:     CAAGGGCGGCAAGCCCGCTGACGGACTCGGCACTTGCACCTACGTCAAAG                         CTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
genomic: CAAGGGCGGCAAGTCCGCTGACGGACTCGGCACTTGCACCTACGTCAAAGgtaccgttcc ... gcatctgcagCTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
EST: gi|60355788|gb|DN222761.1|DN222761
EST:     CAAGGGCGGCAAGTCCGCTGACGGACTCGGCACTTGCACCTACGTCAAAG                         CTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
genomic: CAAGGGCGGCAAGTCCGCTGACGGACTCGGCACTTGCACCTACGTCAAAGgtaccgttcc ... gcatctgcagCTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
EST: gi|5108029|gb|AI739742.1|AI739742
EST:     TGACGGACTCGGCACTTGCACCTACGTCAAAG                         CTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA
genomic: TGACGGACTCGGCACTTGCACCTACGTCAAAGgtaccgttcc ... gcatctgcagCTAGGCACGTATTGTGTGAGAAGCAGGGGAAGATCAATGAAGCTTATAAGA