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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGAGCTGCTTACCGTGCTCCGGTTCCTCGGGGAAGGAGGACAAGAGCTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAGgtaagaccagtctcttctgctgcgcgcttgcctgattttggcggagactgcaagagctctgacagttttgcgatcccgcttcttgctctgttcggtcagc...

Basic information

species Zea mays
transcript GRMZM2G048210_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048210_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g47270.1 (Oryza sativa), 5'ss of exon 1
GAGATGAGCTGCTTACCGTGCTCCGGTTCCTCGGGGAAGGAGGA---------CAAGAGCTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAGgtaagaccagtctcttctgctgcgcgcttgcctgattttggcggagactgcaagagctctgacagttttg-cgatcccgctt-cttgctctgttc-ggtcagc
         ||||| |||||||| || || ||||||||||  |          ||||||| ||||||||||||||||| | || ||||| ||||| |  |||||||||||| |  || |  ||||   |  | |    |  |  | || || | |  || ||    ||      || ||  ||  |||||| || ||  ||  | |||||| 
---------TGCTTCCCGTGCTCGGGGTCGTCGGGGAAGGGCGGGGTTGACGCCAAGAGCGTGGCGGCGCTCTCGCCGGGTCCGCGGCCCGCGGCGAGCGCGGCACCAGgtgaatcccgcatcttagcc--cccctccgatttctcttcgcagggtgtggaaagattcgatttcttctggtgaatccgcttgctggcgttgccccggtcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148972548|gb|EE023511.2|EE023511
EST:     CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAG                         TTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
genomic: CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAGgtaagaccag ... aatggatcagTTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
EST: gi|149083839|gb|EE173214.2|EE173214
EST:     CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAG                         TTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
genomic: CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAGgtaagaccag ... aatggatcagTTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
EST: gi|89247678|gb|DY619464.1|DY619464
EST:     CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAG                         TTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
genomic: CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAGgtaagaccag ... aatggatcagTTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
EST: gi|71311036|gb|DR791825.1|DR791825
EST:     CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAG                         TTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
genomic: CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAGgtaagaccag ... aatggatcagTTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
EST: gi|76282773|gb|DV022341.1|DV022341
EST:     CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAG                         TTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
genomic: CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAGgtaagaccag ... aatggatcagTTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
EST: gi|148970105|gb|EE021043.2|EE021043
EST:     CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAG                         TTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
genomic: CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAGgtaagaccag ... aatggatcagTTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
EST: gi|149112504|gb|EE191352.2|EE191352
EST:     CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAG                         TTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG
genomic: CTTGGCGGCGCTCTCGCCGAGCCCCCGGCCTGCGGCCAAGGCGGCACCAGgtaagaccag ... aatggatcagTTCGATCAAATTCACGTGCTTCGAGCTCCAGGAAGGAAGATTCTGTACCTG