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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCACCCCCACCCCCTTCTCTCTCGTAGCAACGTTTGGGGCGCCGTCGCTGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccatcgcttggtcttccatttctgctgtacgaaaccgagcacccgaaccctaacttaatatatccggatctgatcgaattacaagtctatatgc...

Basic information

species Zea mays
transcript GRMZM2G048045_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211373774|gb|FL382281.1|FL382281
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAR                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211084857|gb|FL394102.1|FL394102
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211493580|gb|FL394426.1|FL394426
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|21432290|gb|BQ547780.1|BQ547780
EST:     TGCCGCCCTACTCGGGTGCCCAGGTC-TGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTCTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211518473|gb|FL391757.1|FL391757
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211431341|gb|FL388365.1|FL388365
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGG
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGG
EST: gi|211511963|gb|FL422086.1|FL422086
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|88756008|gb|DY540149.1|DY540149
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211068069|gb|FL377958.1|FL377958
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|60395918|gb|DN228788.1|DN228788
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211451825|gb|FL381435.1|FL381435
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211227623|gb|FL386147.1|FL386147
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|78103766|gb|DV522194.1|DV522194
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211214580|gb|FL385221.1|FL385221
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211499257|gb|FL389459.1|FL389459
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211109241|gb|FL388583.1|FL388583
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGG
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGG
EST: gi|148942098|gb|EC887100.2|EC887100
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211050736|gb|FL374467.1|FL374467
EST:     TGCCGCTCTACTCGGGTGCCCAGGTMTTGTTCGGGCCCTWCGCCGGCGAG                         CCAGAGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGA
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAG-GGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGA
EST: gi|211118459|gb|FL397822.1|FL397822
EST:     TGCCGCCCTACTCGGGTG-CCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTCTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211447310|gb|FL370711.1|FL370711
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTT--CCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|71332422|gb|DR803167.1|DR803167
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211493638|gb|FL397225.1|FL397225
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211169918|gb|FL423118.1|FL423118
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211303714|gb|FL430334.1|FL430334
EST:     TGCCGCTCTATTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211278586|gb|FL376798.1|FL376798
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGMCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211536231|gb|FL396284.1|FL396284
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|60346518|gb|DN213491.1|DN213491
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211048097|gb|FL385527.1|FL385527
EST:     TGCCGCCCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTCTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211538762|gb|FL372743.1|FL372743
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211332037|gb|FL380496.1|FL380496
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211025119|gb|FL411211.1|FL411211
EST:     TG-CGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|91049006|gb|EB159424.1|EB159424
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211051951|gb|FL423022.1|FL423022
EST:     TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|211496779|gb|FL405075.1|FL405075
EST:     TGCCGCCCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTCTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT
EST: gi|9952999|gb|BE639582.1|BE639582
EST:     TGCCGCCCTACTCGGGTGCCCAGGTCTTG-TCGGGCCCTTCGCCGGCGAG                         CCAGGGGACACTTTCTCTGGTATGAGAGGATCAATGTCCAATTATTATGAT
genomic: TGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 153

CTCCACCCCCACCCCCTTCTCTCTCGTAGCAACGTTTGGGGCGCCGTCGCTGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGATGATTACGACGACATTGATGAGATTGAGGATGACTATGATATGGATGATC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 126

CTCCACCCCCACCCCCTTCTCTCTCGTAGCAACGTTTGGGGCGCCGTCGCTGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGATGATTACGACGACATTGATGAGATTGAGGATGACTATGATATGGATGATC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 85

CTCCACCCCCACCCCCTTCTCTCTCGTAGCAACGTTTGGGGCGCCGTCGCTGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGATGATTACGACGACATTGATGAGATTGAGGATGACTATGATATGGATGATC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 139

CTCCACCCCCACCCCCTTCTCTCTCGTAGCAACGTTTGGGGCGCCGTCGCTGCCGCTCTACTCGGGTGCCCAGGTCTTGTTCGGGCCCTTCGCCGGCGAGgtacgtccat ... ctgtttgcagCCAGGGGACACTTTCTTTGGTATGAGAGGATCAATGTCCAATTATTATGATGATTACGACGACATTGATGAGATTGAGGATGACTATGATATGGATGATC