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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCGGGAGTTCCGCGACCGCTACGTGATCCGTTCGCTCGACGGCGCCGCCGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgtgtagtgacgcgaagggttgtggcgtgcttccggatttgtgttgtattgattgattggtgttctcccggatttgtgctgttttgattgatgttatggctcgtcaatcggcgtggtgttctggacgtggtttaccatcgtcttttcgtgggcag

Basic information

species Zea mays
transcript GRMZM2G047894_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047894_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g18080.2 (Oryza sativa), 5'ss of exon 1
CTGCGGGAGTTCCGCGACCGCTACGTGATCCGTTCGCTCGACGGCGCCGCCGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgtgtagtgacgcgaagggttgtggcgtgcttc-----cggatttgtgttgtattgattgattggtgt----tctcccggatttgtgctgttttgattgatgttatggctcgtcaatcggcgtggtgttctggacgtggttt-acca------tcgtcttttcgtgggcag
|||||||||||||||||||||||||||||||| ||| ||||||||| || ||| |||||||||   ||||||  ||||||| ||||||| |||||| ||||| |   | |       | |        |||  | ||  |     |||| | ||   ||    |   |  ||         || ||| | ||| | | |||  ||| |    ||| | |      ||  | |||  | |   ||||||| || |       | | | |||| | ||||
CTGCGGGAGTTCCGCGACCGCTACGTGATCCGCTCGGTCGACGGCGGCGGCGCCTTCGCCGTCTCCCGCTCCAACGGCTCCCTCCGCCCCCTCTCCGCAGgttaccacttactactcctcccctcaccgtgaagcgcgccgccgccggaatcgttccgtgcaaagcaaaggggaaaacaaatcgcggctatgttccggttttgttggt----tggtttgagtgctgggctcgtgaaccgatggtggttttactaacctgtgcatttgttcgcgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211511662|gb|FL408088.1|FL408088
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGGGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|211199436|gb|FL401716.1|FL401716
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGGGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|211223965|gb|FL409228.1|FL409228
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGGGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|211348875|gb|FL413241.1|FL413241
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGGGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|211285033|gb|FK988595.1|FK988595
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|78086850|gb|DV515243.1|DV515243
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG
EST: gi|211285032|gb|FK988594.1|FK988594
EST:     CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAG                         AGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGGGTGG
genomic: CGCTTTCGCCGTCCTTCGCTCCGGCGGCTCCATCCGCCCTCTCTCCCCAGgtgaagccgt ... tcgtgggcagAGGAAGCCGTAGCTGAGAGCGACTGCAAGGTTTCCAGAATATACGGCGTGG