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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCAATAGTTCTGTTCTACTGGAGGAAGAGCAGGGAGCAAGATGGGGTCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttttttcccattccttctgttttcgcccacagacgattcattgattcttgcatatgtagcgttttcccgcggtgtttttttcctagggttcga...

Basic information

species Zea mays
transcript GRMZM2G047860_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047860_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g12220.1 (Oryza sativa), 5'ss of exon 1
AAAAGCAATAGTTCTGTTCTACTGGAGGAAGAGCAGGGAGCAAGATGGGGTCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatga---------tttttttcccattccttctgttttcgcccacagacgattcattgattcttgcatatgtagcgttttcccgcggtgtttttttcctagggttcga
|   |  |  |            |  |     | ||||   | ||||||||| ||||||||||||||| |||||||||| |||||||| ||||| |||||||| |           || || |    || |  || |||||  | | | |||||| |||  | | ||   |  |      |   | |||| || ||   |         
ATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGgtacgggcggggtttcttcttccttcctcttcttgatttcgttcgccgccgattcgttggctgtggctcgtcgatgtcgatttggtggtggttcttggtt---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211371979|gb|FL186724.1|FL186724
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|32808662|gb|CD960896.1|CD960896
EST:     GATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: GATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|47961761|gb|CN844470.1|CN844470
EST:     TCCGGATNTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|211371978|gb|FL186723.1|FL186723
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|94472096|gb|EB701054.1|EB701054
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|76014693|gb|DT941863.1|DT941863
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT
EST: gi|86465815|gb|DY232188.1|DY232188
EST:     TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCTATGTCCTTGCCGG                         GCCACTCATATCACTTGCTTATCCTCT
genomic: TCCGGATCTTTCCTCAAGGTGCTGGCCAATAACTTCGATGTCCTTGCCGGgtatgatttt ... tttttttcagGCCACTCATATCACTTGCTTATCCTCT