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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACCGCCGCAGACGAGTTCGTGAAGGGCCGCGTCTTCCCCAACGGCGTCGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatggacctccagctcttatttgacctccgaggaccctctggccagggatctcaataaataaacttagtcgggtacttttttccgcaatctatac...

Basic information

species Zea mays
transcript GRMZM2G047564_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047564_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g39344.3 (Oryza sativa), 5'ss of exon 1
GCCACCGCCGCAGACGAGTTCGTGAAGGGCCGCGTCTTCCCCAACGGCGTCGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggat-ggacctccagctcttatttgacctccgaggaccctctggccagggatctcaataaataaacttagtcgggtactttt---ttccgcaatctatac-
||| ||||||| || |||||||||||||||||||||  |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |  ||||   ||||   |    |||      | ||||  |      ||||  |   |   | || | ||||   |     |   || | |    | 
GCCGCCGCCGCGGAGGAGTTCGTGAAGGGCCGCGTCACCCCCAACGGCGTCGCCGTCATCACCCTCGACCGCCCCAAGGCCCTCAACGCCATGAACCTCGgtgagggtcgctcctctctctctctctctctctct-----ctctctctctctctctctctcttcctcctcctatttgggttactgggagtagggcgaccgggccg

upper sequence: GRMZM2G047564_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA05G35260.1 (Glycine max), 5'ss of exon 1
GCCACCGCCGCAGACGAGTTCGTGAAGGGCCGCGTCTTCCCCAACGGCGTCGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatggacctccagctcttatttgacctccgaggaccctctggccagggatctcaataaataaacttagtcgggtacttttttccgcaatctatac-
 || |    || || || || |||||||||   ||    |  ||||||||||| |||||||| ||||| || ||||| || ||||||||||||||||| |||          || |  || ||   | |  |  |    |  |   |    | ||     |     |  ||  |  || |  |         |  |  || 
TCCGCTATGGCCGAAGAATTTGTGAAGGGCACTGTTCATCAAAACGGCGTCGCTGTCATCACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgtttttcattttcttcttcttttccataat-tatgcatgctattaagttgagaattgtgttcggagattttcttttggaatctggactgtttagttgaact

upper sequence: GRMZM2G047564_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G04460.1 (Glycine max), 5'ss of exon 1
GCCACCGCCGCAGACGAGTTCGTGAAGGGCCGCGTCTTCCCCAACGGCGTCGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatggacctccagctcttatttgacctccgaggaccctctggccagggatctcaataaataaacttagtcgggtacttttttccgcaatctatac--------------
 || |    || || || || |||||||||   ||    |  ||||||||||| ||||| || ||||| || ||||| || ||||||||||||||||| |||           ||||  |  |  ||    ||||           || |      | | |  | ||   |  ||||  | ||  ||  | |||||  ||              
TCCGCTATGGCCGAAGAATTTGTGAAGGGCTCTGTTCATCAAAACGGCGTCGCTGTCATAACCCTCGATCGCCCCAAAGCTCTCAACGCCATGAACCTAGgt---------tttccatattcttcttcgtttccgtaattatgtatgcta-----ttaagttgagaattgtcttcggagatttgcttttggaatctggactgttttgttgaact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71312658|gb|DR792850.1|DR792850
EST:     CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCG                         AAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
genomic: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
EST: gi|211063903|gb|FL196767.1|FL196767
EST:     CGCCGTCATAACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCG                         AAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
genomic: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
EST: gi|211063902|gb|FL196766.1|FL196766
EST:     CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCG                         AAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
genomic: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
EST: gi|211063911|gb|FL196775.1|FL196775
EST:     CGCCGTCATAACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCG                         AAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
genomic: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
EST: gi|211180614|gb|FL196781.1|FL196781
EST:     CGCCGTCATAACGCTCGACCGACCCAAGGCCCTCAACGCAATGAACCTCG                         AAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
genomic: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
EST: gi|211180621|gb|FL196788.1|FL196788
EST:     CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCG                         AAATGGATGTTAGATACAAGGNACTTCTTGATGAATGGGAAACAAATCC
genomic: CGCCGTCATCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCC
EST: gi|211180619|gb|FL196786.1|FL196786
EST:     GCSK-CAATAACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCG                         AAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA
genomic: GCCGTCA-TCACGCTCGACCGACCCAAGGCCCTCAACGCCATGAACCTCGgtgaggatgg ... atgattgcagAAATGGATGTTAGATACAAGGCACTTCTTGATGAATGGGAAACAAATCCAA