1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCGAAGAACCCTCGCTCGAGACCGAAGAAGACAAAATCGCATCTCCTCGCCTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatcccacctctcctctcctgagattggaaaaatgcactgctcgagcttcgtttttaccgggcggggctcccgcgggaagggagggcgatcggt...
species | Zea mays |
transcript | GRMZM2G047223_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|211316770|gb|FL360982.1|FL360982
genomic: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACMAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|78113905|gb|DV532294.1|DV532294
genomic: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|211004390|gb|FL335892.1|FL335892
genomic: CTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|211322760|gb|FL352838.1|FL352838
genomic: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: TCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCG-C-CGCGATGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATEST: gi|211312819|gb|FL367452.1|FL367452
genomic: TCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGA-GAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGAT
EST: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGRG-GAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|211078309|gb|FL342738.1|FL342738
genomic: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|211402149|gb|FL346428.1|FL346428
genomic: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|211274707|gb|FL354611.1|FL354611
genomic: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|211199995|gb|FL308017.1|FL308017
genomic: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGA-TTCGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|211463075|gb|FL352967.1|FL352967
genomic: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAYGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATEST: gi|211107631|gb|FL307913.1|FL307913
genomic: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTA-GGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGAT
EST: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|91877110|gb|EB407067.1|EB407067
genomic: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|89758012|gb|DY687355.1|DY687355
genomic: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|211419360|gb|FL322265.1|FL322265
genomic: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGA-TTCGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|89756849|gb|DY686713.1|DY686713
genomic: CCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|91874336|gb|EB404293.1|EB404293
genomic: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|211241359|gb|FL313117.1|FL313117
genomic: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: GAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGA-TTCGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|211342758|gb|FL350527.1|FL350527
genomic: GAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|78117555|gb|DV535942.1|DV535942
genomic: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|71771758|gb|DR969695.1|DR969695
genomic: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|78118515|gb|DV536899.1|DV536899
genomic: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATGEST: gi|211258118|gb|FL346785.1|FL346785
genomic: CTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
EST: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAG GATATCGA-TTCGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
genomic: CCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatc ... taattggcagGATATCGATTTAGGTATATGGACAAGGTGTCTGAAGGTACTAAGTGAGATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAAGAACCCTCGCTCGAGACCGAAGAAGACAAAATCGCATCTCCTCGCCTCCTCCCCTCCTCCCGAGATCCGGGCAAAGCGCGCCGCGCGAGAACCAGgtcggtcatcccacctctcctctcctgagattggaaaaatgcactgctcgagcttcgtttttaccgggcggggctcccgcgggaagggagggcgatcggt
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG