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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAAGGAGGAGGAGAGGATACCAGAATGGCGTCGCGCTCGGCGTCCAAGGATATCATCACGCTGCGAGGCTCTGCCGCCATCGTCAGCGAGTTCTTCGgtacgcacgcggctccctgccccctttcctgtttagtttcttttttcgcccatcgggtgcctgacgaaatgcttcgcttcgcatcggcag

Basic information

species Zea mays
transcript GRMZM2G047143_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G047143_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g40940.2 (Oryza sativa), 5'ss of exon 1
GAGGAAGGAGGAGGAGAGGATACCAGAATGGCGTCGCGCTCGGCGTCCAAGGATATCATCACGCTGCGAGGCTCTGCCGCCATCGTCAGCGAGTTCTTCGgtacgcacgcggctcc-ctgccccctttcctgtttagtttctttttt---------------------cgcccatcgggtgcctgacgaaatgcttcgcttcgcatcggcag
    ||| ||| |  | ||||      ||||||||| |  ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||    |    |||| || ||   | |  | |||  ||||    |                      |||||    ||||  |||   ||||| |    |||  | |||||
AGTTAAGAAGGTGAGGCGGATCAGGAGATGGCGTCGAGGACGGCGTCCAAGGACATCATCACGCTGCGGGGCTCCGCCGCCATCGTCAGCGAGTTCTTCGgtagaagccgatctccgcttccgtttcttttattttttttcgccctcggctcctctcacgcgtgcgcgcgcccgataggtgtttgatcgaatgccttttctcgtgt-ggcag