Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTTGGCTCTCTCTCCATCCTCTGTTCGTGGCAACAGTTGCTTTGCTTTCCCCACCTGGTTCTACTCCATGTTTGTAAAAGgtgctgctgcgattattcagtacttgcgaacatatatttgtttctttgtactaccactactgcactacaatcgtgtatggtttctttctttgtaaaatgt...

Basic information

species Zea mays
transcript GRMZM2G046587_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74244615|gb|DT652529.1|DT652529
EST:     CAACAGTTGCTTTGCTTTCCCCACCTGGTTCTACTCCATGTTTGTAAAAG                         CCATGGCTGGACCTGCTGTTCTCAATGAGCGTATCCTTTCTTCCATGTCCC
genomic: CAACAGTTGCTTTGCTTTCCCCACCTGGTTCTACTCCATGTTTGTAAAAGgtgctgctgc ... taaatcgtagCCATGGCTGGACCTGCTGTTCTCAATGAGCGTATCCTTTCTTCCATGTCCC
EST: gi|211349013|gb|FL190902.1|FL190902
EST:     CAACAGTTGCTTTGCTTTCCCCACCTGGTTCTACTCCATGTTTGTAAAAG                         CCATGGCTGGACCTGCTGTTCTCAATGAGCGTATCCTTTCTTCCATGTCCC
genomic: CAACAGTTGCTTTGCTTTCCCCACCTGGTTCTACTCCATGTTTGTAAAAGgtgctgctgc ... taaatcgtagCCATGGCTGGACCTGCTGTTCTCAATGAGCGTATCCTTTCTTCCATGTCCC
EST: gi|211351406|gb|FL190903.1|FL190903
EST:     CAACAGTTGCTTTGCTTTCCCCACCTGGTTCTACTCCATGTTTGTAAAAG                         CCATGGCTGGACCTGCTGTTCTCAATGAGCGTATCCTTTCTTCCATGTCCC
genomic: CAACAGTTGCTTTGCTTTCCCCACCTGGTTCTACTCCATGTTTGTAAAAGgtgctgctgc ... taaatcgtagCCATGGCTGGACCTGCTGTTCTCAATGAGCGTATCCTTTCTTCCATGTCCC