Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCATCGCGCGGTACCTCAAGGCCGGGAAGTATGCGGAGCGCGTCGGCGCCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatcccccgacccctcttcctctcttcatgttcaccagatctgctcttgtccgatctcgtttgaatcgccgttgtgaatcgattgtttccttcgtttccgcag

Basic information

species Zea mays
transcript GRMZM2G046055_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G046055_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g51200.1 (Oryza sativa), 5'ss of exon 1
TCGCATCGCGCGGTACCTCAAGGCCGGGAAGTATGCGGAGCGCGTCGGCGCCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatcccccgacccctcttcctctcttcatgttcaccagatctgctcttgtccgatctcgtttgaatcgccgttgtgaatcgattgtttccttcgttt-ccgcag
 |||||||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||| ||||   ||   |   | | ||  ||   |    |||||  ||   ||   | ||    ||||||    |    |||     ||  ||  |||   |||||
CCGCATCGCCCGCTACCTCAAGGCCGGCAAGTACGCGGAGCGCGTCGGCGCCGGCGCCCCCGTCTACCTCTCCGCCGTCCTCGAGTACCTCGCCGCCGAGgtaaaccccatcccttcccctcccgctcgatccgcgtgggatct--tccgatctcgtgtcccccgaatcgtgtgttctgatcacccattggctgtgttaatcgcag

upper sequence: GRMZM2G046055_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ38642 (Selaginella moellendorffii), 5'ss of exon 1
TCGCATCGCGCGGTACCTCAAGGCCGGGAAGTATGCGGAGCGCGTCGGCGCCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatcccccgacccctcttcctctcttcatgttcaccagatctgctcttgtccgatctcgtttgaatcgccgttgtgaatcgattgtttccttcgtttccgcag
  | ||||| || | ||||||||| || |||||||| ||||| || || ||||| || || || ||| |  ||||||| ||||||||||| ||||||||||||           |    || |   || | | |     |   |    ||||   |  |||   || |  |  || ||  | |||  | | |   |         
AAGGATCGCTCGATTCCTCAAGGCGGGCAAGTATGCCGAGCGTGTTGGTGCCGGAGCTCCGGTCTACATGGCCGCCGTGCTCGAGTATCTAGCCGCCGAGgtatgtgtgatcttcgcgctcatgggtttagggttcttgggcttttctttgtggcagatcgaa-gagtaacgattttgtgt-gatgatctacccag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12970254|gb|BG266891.1|BG266891
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|9255179|gb|BE345647.1|BE345647
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|5268452|gb|AI770416.1|AI770416
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|31362551|gb|CD446908.1|CD446908
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211437254|gb|FK965999.1|FK965999
EST:     CCGGGGCCCCCGTGTACCTCTCCGCTGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTCGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|9731773|gb|BE510525.1|BE510525
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211437251|gb|FK965996.1|FK965996
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211434650|gb|FK965978.1|FK965978
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAAAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|31612175|gb|CD568797.1|CD568797
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|15053241|gb|BI358786.1|BI358786
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211437256|gb|FK966001.1|FK966001
EST:     CCGGGGCCCCCGTGTACCTCTCCGCTGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTCGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|60358497|gb|DN225470.1|DN225470
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211434651|gb|FK965979.1|FK965979
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211437247|gb|FK965992.1|FK965992
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211497838|gb|FL444531.1|FL444531
EST:     TCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: TCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|9731772|gb|BE510524.1|BE510524
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACACCAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|21891560|gb|BQ744773.1|BQ744773
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCCCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211432052|gb|FK965968.1|FK965968
EST:     CCGGGGCCCCCGTGTACCTCTCCGCTGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTCGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|20811058|gb|BQ295536.1|BQ295536
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|60340919|gb|DN207892.1|DN207892
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|20507519|gb|BQ279669.1|BQ279669
EST:     CCGGTGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211434653|gb|FK965981.1|FK965981
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211434655|gb|FK965983.1|FK965983
EST:     C-GGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|21088782|gb|BQ401095.1|BQ401095
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211437250|gb|FK965995.1|FK965995
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211437253|gb|FK965998.1|FK965998
EST:     CCGGGGCCCCCGTGTACCTCTCCGCTGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTCGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|31356578|gb|CD440935.1|CD440935
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|20208185|gb|BQ134274.1|BQ134274
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|31611882|gb|CD568504.1|CD568504
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|60348650|gb|DN215623.1|DN215623
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|116822380|gb|EC865777.1|EC865777
EST:     CCGGGGCCCCCGTGTA-CTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211437255|gb|FK966000.1|FK966000
EST:     CCGGGGCCCCCGTGTACCTCTCCGCTGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTCGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211437257|gb|FK966002.1|FK966002
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211432054|gb|FK965970.1|FK965970
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|7118948|gb|AW497532.1|AW497532
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|31909708|gb|CD651055.1|CD651055
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|148959200|gb|EE010649.2|EE010649
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|31664037|gb|CD573217.1|CD573217
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|31357378|gb|CD441735.1|CD441735
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|37377025|gb|CF625083.1|CF625083
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTCGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|15053669|gb|BI359214.1|BI359214
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|4827741|gb|AI668433.1|AI668433
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211437252|gb|FK965997.1|FK965997
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTTGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|32165065|gb|CD670383.1|CD670383
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|22545740|gb|BU098099.1|BU098099
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211432051|gb|FK965967.1|FK965967
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211434652|gb|FK965980.1|FK965980
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211432055|gb|FK965971.1|FK965971
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|21891561|gb|BQ744774.1|BQ744774
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACC
EST: gi|30306682|gb|CD001355.1|CD001355
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211432056|gb|FK965972.1|FK965972
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|22549217|gb|BU101418.1|BU101418
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|211434654|gb|FK965982.1|FK965982
EST:     CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
EST: gi|5555587|gb|AI881538.1|AI881538
EST:     CCGGNGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAG                         GTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC
genomic: CCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 219

TCGCATCGCGCGGTACCTCAAGGCCGGGAAGTATGCGGAGCGCGTCGGCGCCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATCGTGCCGCGCCACATCCAGCTGGCGGTGCGGAACGACGAGGAGCTGAGCA


Block sizes: 45 (upstream exon), 48 (downstream exon)
Score: 128

TCGCATCGCGCGGTACCTCAAGGCCGGGAAGTATGCGGAGCGCGTCGGCGCCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATCGTGCCGCGCCACATCCAGCTGGCGGTGCGGAACGACGAGGAGCTGAGCA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 94

TCGCATCGCGCGGTACCTCAAGGCCGGGAAGTATGCGGAGCGCGTCGGCGCCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATCGTGCCGCGCCACATCCAGCTGGCGGTGCGGAACGACGAGGAGCTGAGCA


Block sizes: 45 (upstream exon), 48 (downstream exon)
Score: 50

TCGCATCGCGCGGTACCTCAAGGCCGGGAAGTATGCGGAGCGCGTCGGCGCCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatccccc ... gtttccgcagGTGCTGGAGCTGGCCGGGAACGCTGCTCGGGACAACAAGAAGAACCGTATCGTGCCGCGCCACATCCAGCTGGCGGTGCGGAACGACGAGGAGCTGAGCA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGCATCGCGCGGTACCTCAAGGCCGGGAAGTATGCGGAGCGCGTCGGCGCCGGGGCCCCCGTGTACCTCTCCGCCGTTCTCGAGTATCTCGCCGCCGAGgtaatcccccgacccctcttcctctcttcatgttcaccagatctgctcttgtccgatctcgtttgaatcgccgttgtgaatcgattgtttccttcgtttccgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CTCCGCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGCCGCCG