1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TAGTCGCTACTTCCCCTCCGATCGTCGACGACGACGCATCCACCCGAGCCCTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtacccccccccccccccccccctcgcctcccgtgtcgtccctccttctcgccccggatctcgaattccttacagtttcgccccctgcccattgcag
species | Zea mays |
transcript | GRMZM2G045371_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|211320131|gb|FL100662.1|FL100662
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|76018879|gb|DT946049.1|DT946049
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|211320126|gb|FL100657.1|FL100657
genomic: CCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|32908095|gb|CF012908.1|CF012908
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|15214985|gb|BI431121.1|BI431121
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: TCCGGCTATGTCA ATCTTCGAGTACAACGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|32914687|gb|CF019499.1|CF019499
genomic: TCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGTAG-TCTGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|78106724|gb|DV525142.1|DV525142
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|76923710|gb|DV169620.1|DV169620
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|211320129|gb|FL100660.1|FL100660
genomic: CTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|211320128|gb|FL100659.1|FL100659
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|32913371|gb|CF018183.1|CF018183
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|60398455|gb|DN231271.1|DN231271
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|32858096|gb|CD997777.1|CD997777
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|71438351|gb|DR819401.1|DR819401
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|211320127|gb|FL100658.1|FL100658
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|76284605|gb|DV024173.1|DV024173
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|78091664|gb|DV520038.1|DV520038
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|50337097|gb|CO532223.1|CO532223
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|211320444|gb|FL345949.1|FL345949
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: GCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAACGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|78086605|gb|DV514998.1|DV514998
genomic: GCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|31361651|gb|CD446008.1|CD446008
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|71774247|gb|DR972125.1|DR972125
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|116827042|gb|EC870897.1|EC870897
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: GCCGCAGCTCCGGCTATGTCA ATCTTCGAGTAC-ACGGGTCCGCTGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|32850853|gb|CD990534.1|CD990534
genomic: GCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGCEST: gi|211275645|gb|FL309928.1|FL309928
genomic: CTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
EST: GCCGCAGCTCCGGCTATGTCA ATCTTCGAGTACAACGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
genomic: GCCGCAGCTCCGGCTATGTCAgtgagtaccc ... cccattgcagATCTTCGAGTACAATGGGTCCGCCGTGGTGGCGATGGTGGGGAAGAACTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGTCGCTACTTCCCCTCCGATCGTCGACGACGACGCATCCACCCGAGCCCTTCTCCGCGAAATAGCCGTCGCCGCACTGCCGCAGCTCCGGCTATGTCAgtgagtacccccccccccccccccccctcgcctcccgtgtcgtccctccttctcgccccggatctcgaattccttacagtttcgccccctgcccattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC