1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGGTGGGTTTGCTGAAGTGACATCGGCCGAGGTGGAACTGGTTGGGGGGAGTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccagcggagtgaagatccacctaaattcattcggtttctcggattggagacctacagttttcccccgattctttttgtattggagatttatggataagaagtcgtggtgatcgatgcttcgttgcag
species | Zea mays |
transcript | GRMZM2G045331_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG TCGTGCATTTGATTTGAGATGGAAAATATTCCCCACTCCTTCGCAGGGGCCEST: gi|76281973|gb|DV021541.1|DV021541
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|78088708|gb|DV517101.1|DV517101
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|60350887|gb|DN217860.1|DN217860
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCTGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|149048884|gb|EE048384.2|EE048384
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG T--TG-AGTTGAG---A--TGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|31351237|gb|CD435594.1|CD435594
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCTGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|78091209|gb|DV519583.1|DV519583
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|211374626|gb|FK958606.1|FK958606
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|71445883|gb|DR826933.1|DR826933
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|211374622|gb|FK958602.1|FK958602
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCA-TTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|211374623|gb|FK958603.1|FK958603
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|211374624|gb|FK958604.1|FK958604
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCTGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|76936740|gb|DV174858.1|DV174858
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|31354815|gb|CD439172.1|CD439172
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCTGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|211371968|gb|FK958598.1|FK958598
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCTGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|211371970|gb|FK958600.1|FK958600
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|74233595|gb|DT641509.1|DT641509
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCCEST: gi|91056772|gb|EB167190.1|EB167190
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
EST: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAG TCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
genomic: GTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccag ... ttcgttgcagTCGTGCAGTTGAGTTGAGATGGCAAACATTCCCCACTCCTTCGCAGGGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTGGGTTTGCTGAAGTGACATCGGCCGAGGTGGAACTGGTTGGGGGGAGTCCATTTCGGGTTCGAGCAGCCTGAGCCGGCGCGCCGGCAGCGACGGAGgtaagtccagcggagtgaagatccacctaaattcattcggtttctcggattggagacctacagttttcccccgattctttttgtattggagatttatggataagaagtcgtggtgatcgatgcttcgttgcag
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